¹⁸O is an ideal tracer for characterizing hydrological processes because it can be reliably measured in several watershed hydrological compartments. Here, we present multiyear isotopic data, i.e. ¹⁸O variations (δ¹⁸O), for precipitation inputs, surface water and groundwater in the Shingobee River Headwaters Area (SRHA), a well-instrumented research catchment in north-central Minnesota. SRHA surface waters exhibit δ¹⁸O seasonal variations similar to those of groundwaters, and seasonal δ¹⁸O variations plotted versus time fit seasonal sine functions. These seasonal δ¹⁸O variations were interpreted to estimate surface water and groundwater mean residence times (MRTs) at sampling locations near topographically closed-basin lakes. MRT variations of about 1 to 16 years have been estimated over an area covering about 9 km² from the basin boundary to the most downgradient well. Estimated MRT error (±0·3 to ±0·7 years) is small for short MRTs and is much larger (±10 years) for a well with an MRT (16 years) near the limit of the method. Groundwater transit time estimates based on Darcy's law, tritium content, and the seasonal δ¹⁸O amplitude approach appear to be consistent within the limits of each method. The results from this study suggest that use of the δ¹⁸O seasonal variation method to determine MRTs can help assess groundwater recharge areas in small headwaters catchments.