Amphidromous fishes are major components of oceanic tropical island stream ecosystems, such as those of the Caribbean island, Puerto Rico. Fishes with this life history face threats related to the requirement for connectivity between freshwater and marine environments during early life stages. Pelagic larval duration and recruitment phenology are 2 early life-history processes that are crucial for the biology, ecology, conservation, and management of amphidromous fishes. However, these processes are understudied in the Caribbean in general and have never been quantified in Puerto Rico. We quantified recruit abundance, recruitment phenology, and pelagic larval duration of several Caribbean amphidromous fish species in multiple rivers in Puerto Rico and explored the effects of environmental variables on recruit abundances. Two fish taxa—sirajo goby (Sicydium spp.) and River Goby (Awaous banana)—were exceptionally abundant as postlarvae and recruited to Caribbean rivers in pulsed migration episodes that were periodic at annual and lunar scales. Sirajo goby and River Goby recruit abundances varied among rivers, were greater at sunrise than at sunset, and were positively related to river discharge. The pelagic larval duration of 4 fish taxa ranged from a minimum of 28 d to a maximum of 103 d with means between 43 ± 7 d (SD) and 65 ± 11 d. We identified the last-quarter moon phase during the months of June through January as periods of maximum amphidromous fish recruitment to freshwater streams. The results and conclusions of our study can be applied to identify critical times to maintain river–ocean connectivity and stream flow for the benefit of the amphidromous fish population dynamics, stream ecology, and natural resources of the Caribbean.