The U.S. Geological Survey, in cooperation with the Texas Water Development Board, used surface geophysical methods at the Texas A&M University Brazos River Hydrologic Field Research Site near College Station, Texas, in a pilot study, to characterize the hydrostratigraphic properties of the Brazos River alluvium aquifer and determine the effectiveness of the methods to aid in generating an improved ground-water availability model. Three non-invasive surface geophysical methods were used to characterize the electrical stratigraphy and hydraulic properties and to interpret the hydrostratigraphy of the Brazos River alluvium aquifer. Two methods, time-domain electromagnetic (TDEM) soundings and two-dimensional direct-current (2D–DC) resistivity imaging, were used to define the lateral and vertical extent of the Ships clay, the alluvium of the Brazos River alluvium aquifer, and the underlying Yegua Formation. Magnetic resonance sounding (MRS), a recently developed geophysical method, was used to derive estimates of the hydrologic properties including percentage water content and hydraulic conductivity. Results from the geophysics study demonstrated the usefulness of combined TDEM, 2D–DC resistivity, and MRS methods to reduce the need for additional boreholes in areas with data gaps and to provide more accurate information for ground-water availability models. Stratigraphically, the principal finding of this study is the relation between electrical resistivity and the depth and thickness of the subsurface hydrostratigraphic units at the site. TDEM data defined a three-layer electrical stratigraphy corresponding to a conductor-resistor-conductor that represents the hydrostratigraphic units—the Ships clay, the alluvium of the Brazos River alluvium aquifer, and the Yegua Formation. Sharp electrical boundaries occur at about 4 to 6 and 20 to 22 meters below land surface based on the TDEM data and define the geometry of the more resistive Brazos River alluvium aquifer. Variations in resistivity in the alluvium aquifer range from 10 to more than 175 ohm-meters possibly are caused by lateral changes in grain size. Resistivity increases from east to west along a profile away from the Brazos River, which signifies an increase in grain size within the alluvium aquifer and therefore a more productive zone with more abundant water in the aquifer. MRS data can help delineate the subsurface hydrostratigraphy and identify the geometric boundaries of the hydrostratigraphic units by identifying changes in the free water content, transmissivity, and hydraulic conductivity. MRS data indicate that most productive zones of the alluvium aquifer occur between 12 and 25 meters below land surface in the western part of the study area where the hydraulic conductivity can be as high as 250 meters per day. Hydrostratigraphically, individual hydraulic conductivity values derived from MRS were consistent with those from aquifer tests conducted in 1996 in the study area. Average hydraulic conductivity values from the aquifer tests range from about 61 to 80 meters per day, whereas the MRS-derived hydraulic conductivity values range from about 27 to 97 meters per day. Interpreting an interpolated profile of the hydraulic conductivity values and individual values derived from MRS can help describe the hydrostratigraphic framework of an area and constrain ground-water models for better accuracy.