USGS Publications Warehouse

Electrolyte depletion in white-nose syndrome bats

Mon, 20 May 2013 00:00 -0500

The emerging wildlife disease white-nose syndrome is causing widespread mortality in hibernating North American bats. White-nose syndrome occurs when the fungus Geomyces destructans infects the living skin of bats during hibernation, but links between infection and mortality are underexplored. We analyzed blood from hibernating bats and compared blood electrolyte levels to wing damage caused by the fungus. Sodium and chloride tended to decrease as wing damage increased in severity. Depletion of these electrolytes suggests that infected bats may become hypotonically dehydrated during winter. Although bats regularly arouse from hibernation to drink during winter, water available in hibernacula may not contain sufficient electrolytes to offset winter losses caused by disease. Damage to bat wings from G. destructans may cause life-threatening electrolyte imbalances.

White-nose syndrome in bats: illuminating the darkness

Cryan, Paul M.; Meteyer, Carol U.; Boyles, Justin G.; Blehert, David S. — Mon, 20 May 2013 00:00 -0500

Happy ten-year anniversary to BMC Biology! We can attest to the effectiveness of the journal in reaching a great diversity of scientists based on reader responses to our commentary [1] about bat white-nose syndrome (WNS) two years ago. WNS is still on course to rank among the most destructive wildlife diseases to emerge in recent history, and it has continued to have unprecedented effects on populations of hibernating bats in eastern North America. At the time of our last writing in November 2010, the cold-adapted fungus then presumed to cause WNS (Geomyces destructans) had spread about 1,300 km from an index site in New York (Figure 1). In those early years of the epizootic, WNS caused a staggering wave of mass mortality among all six species of hibernating bats that occur in north-eastern North America. Since November 2010, WNS has spread into eight additional US states and two more Canadian provinces (Figure 1), and has continued to cause mortality in those six species most affected during the early years of the epizootic. Although part of a mostly tragic story has continued to unfold as new areas are affected, anecdotal signs are emerging that all may not be lost when it comes to hibernating bats and WNS. Amid the continued large-scale population declines of certain species, we have yet to see mass mortality in some of the more westerly areas where the fungus was detected two winters ago (Figure 1). Also, recently disease without obvious mortality was diagnosed in gray bats (Myotis grisescens) - an endangered species thought by many two years ago to be at high risk of extinction from WNS. Clearly, large gaps in our understanding of WNS remain, but some have been filled since we last communicated with readers of BMC Biology.

Intragenomic sequence variation at the ITS1 - ITS2 region and at the 18S and 28S nuclear ribosomal DNA genes of the New Zealand mud snail, Potamopyrgus antipodarum (Hydrobiidae: mollusca)

Hoy, Marshal S.; Rodriguez, Rusty J. — Mon, 20 May 2013 00:00 -0500

Molecular genetic analysis was conducted on two populations of the invasive non-native New Zealand mud snail (Potamopyrgus antipodarum), one from a freshwater ecosystem in Devil's Lake (Oregon, USA) and the other from an ecosystem of higher salinity in the Columbia River estuary (Hammond Harbor, Oregon, USA). To elucidate potential genetic differences between the two populations, three segments of nuclear ribosomal DNA (rDNA), the ITS1-ITS2 regions and the 18S and 28S rDNA genes were cloned and sequenced. Variant sequences within each individual were found in all three rDNA segments. Folding models were utilized for secondary structure analysis and results indicated that there were many sequences which contained structure-altering polymorphisms, which suggests they could be nonfunctional pseudogenes. In addition, analysis of molecular variance (AMOVA) was used for hierarchical analysis of genetic variance to estimate variation within and among populations and within individuals. AMOVA revealed significant variation in the ITS region between the populations and among clones within individuals, while in the 5.8S rDNA significant variation was revealed among individuals within the two populations. High levels of intragenomic variation were found in the ITS regions, which are known to be highly variable in many organisms. More interestingly, intragenomic variation was also found in the 18S and 28S rDNA, which has rarely been observed in animals and is so far unreported in Mollusca. We postulate that in these P. antipodarum populations the effects of concerted evolution are diminished due to the fact that not all of the rDNA genes in their polyploid genome should be essential for sustaining cellular function. This could lead to a lessening of selection pressures, allowing mutations to accumulate in some copies, changing them into variant sequences.

High-resolution seismic-reflection and marine-magnetic data from offshore central California--San Gregorio to Point Sur

Mon, 20 May 2013 00:00 -0500

The U.S. Geological Survey collected high-resolution seismic-reflection data on four surveys (S-N1-09-MB, S-15-10-NC, S-06-11-MB, and S-04-12-MB) and marine-magnetic data on one survey (S-06-11-MB) between 2009 and 2012, offshore of central California between San Gregorio and Point Sur. This work was supported in part by the California Seafloor Mapping Program. The survey areas span about 120 km of California's coast (including Monterey Bay). Most data were collected aboard the U.S. Geological Survey R/V Parke Snavely. Cumulatively, approximately 1,410 km of single-channel seismic-reflection data were acquired, mainly using a SIG 2mille minisparker. About 44 km of data were collected simultaneously using an EdgeTech Chirp 512. Subbottom acoustic penetration spanned tens to several hundreds of meters, variable by location. Marine magnetic data were collected on approximately 460 km of track lines (mainly in southern Monterey Bay) using a Geometrics G882 cesium-vapor marine magnetometer. This report includes maps and navigation files of the surveyed transects, linked to Google Earth™ software, as well as digital data files showing images of each transect in SEG-Y and JPEG formats. The images of bedrock, sediment deposits, and tectonic structure provide geologic information that is essential to hazard assessment, regional sediment management, and coastal and marine spatial planning at Federal, State and local levels, as well as to future research on the geomorphic, sedimentary, tectonic, and climatic record of central California.

Saltwater intrusion in the surficial aquifer system of the Big Cypress Basin, southwest Florida, and a proposed plan for improved salinity monitoring

Prinos, Scott T. — Mon, 20 May 2013 00:00 -0500

The installation of drainage canals, poorly cased wells, and water-supply withdrawals have led to saltwater intrusion in the primary water-use aquifers in southwest Florida. Increasing population and water use have exacerbated this problem. Installation of water-control structures, well-plugging projects, and regulation of water use have slowed saltwater intrusion, but the chloride concentration of samples from some of the monitoring wells in this area indicates that saltwater intrusion continues to occur. In addition, rising sea level could increase the rate and extent of saltwater intrusion. The existing saltwater intrusion monitoring network was examined and found to lack the necessary organization, spatial distribution, and design to properly evaluate saltwater intrusion. The most recent hydrogeologic framework of southwest Florida indicates that some wells may be open to multiple aquifers or have an incorrect aquifer designation. Some of the sampling methods being used could result in poor-quality data. Some older wells are badly corroded, obstructed, or damaged and may not yield useable samples. Saltwater in some of the canals is in close proximity to coastal well fields. In some instances, saltwater occasionally occurs upstream from coastal salinity control structures. These factors lead to an incomplete understanding of the extent and threat of saltwater intrusion in southwest Florida. A proposed plan to improve the saltwater intrusion monitoring network in the South Florida Water Management District’s Big Cypress Basin describes improvements in (1) network management, (2) quality assurance, (3) documentation, (4) training, and (5) data accessibility. The plan describes improvements to hydrostratigraphic and geospatial network coverage that can be accomplished using additional monitoring, surface geophysical surveys, and borehole geophysical logging. Sampling methods and improvements to monitoring well design are described in detail. Geochemical analyses that provide insights concerning the sources of saltwater in the aquifers are described. The requirement to abandon inactive wells is discussed.

Flood-inundation maps for the East Fork White River at Columbus, Indiana

Lombard, Pamela J. — Mon, 20 May 2013 00:00 -0500

Digital flood-inundation maps for a 5.4-mile reach of the East Fork White River at Columbus, Indiana, from where the Flatrock and Driftwood Rivers combine to make up East Fork White River to just upstream of the confluence of Clifty Creek with the East Fork White River, were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Department of Transportation. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation, depict estimates of the areal extent of flooding corresponding to selected water levels (stages) at USGS streamgage 03364000, East Fork White River at Columbus, Indiana. Current conditions at the USGS streamgage may be obtained on the Internet from the USGS National Water Information System (http://waterdata.usgs.gov/in/nwis/uv/?site_no=03364000&agency_cd=USGS&). The National Weather Service (NWS) forecasts flood hydrographs for the East Fork White River at Columbus, Indiana at their Advanced Hydrologic Prediction Service (AHPS) flood warning system Website (http://water.weather.gov/ahps/), that may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. In this study, flood profiles were computed for the stream reach by means of a one-dimensional step-backwater model. The hydraulic model was calibrated by using the most current stage-discharge relation at USGS streamgage 03364000, East Fork White River at Columbus, Indiana. The calibrated hydraulic model was then used to determine 15 water-surface profiles for flood stages at 1-foot (ft) intervals referenced to the streamgage datum and ranging from bankfull to approximately the highest recorded water level at the streamgage. The simulated water-surface profiles were then combined with a geographic information system digital elevation model (derived from Light Detection and Ranging (LiDAR) data), having a 0.37-ft vertical accuracy and a 1.02 ft horizontal accuracy), in order to delineate the area flooded at each water level. The availability of these maps, along with Internet information regarding current stage from the USGS streamgage at Columbus, Indiana, and forecasted stream stages from the NWS will provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures as well as for post-flood recovery efforts.

Chemical transfers along slowly eroding catenas developed on granitic cratons in southern Africa

Sat, 18 May 2013 00:00 -0500

A catena is a series of distinct but co-evolving soils arrayed along a slope. On low-slope, slowly eroding catenas the redistribution of mass occurs predominantly as plasma, the dissolved and suspended constituents in soil water. We applied mass balance methods to track how redistribution via plasma contributed to physical and geochemical differentiation of nine slowly eroding (~ 5 mm ky^{− 1}) granitic catenas. The catenas were arrayed in a 3 × 3 climate by relief matrix and located in Kruger National Park, South Africa. Most of the catenas contained at least one illuviated soil profile that had undergone more volumetric expansion and less mass loss, and these soils were located in the lower halves of the slopes. By comparison, the majority of slope positions were eluviated. Soils from the wetter climates (550 and 730 mm precipitation yr^{− 1}) generally had undergone greater collapse and lost more mass, while soils in the drier climate (470 mm yr^{− 1}) had undergone expansion and lost less mass. Effects of differences in catena relief were less clear. Within each climate zone, soil horizon mass loss and strain were correlated, as were losses of most major elements, illustrating the predominant influence of primary mineral weathering. Nevertheless, mass loss and volumetric collapse did not become extreme because of the skeleton of resistant primary mineral grains inherited from the granite. Colloidal clay redistribution, as traced by the ratio of Ti to Zr in soil, suggested clay losses via suspension from catena eluvial zones. Thus illuviation of colloidal clays into downslope soils may be crucial to catena development by restricting subsurface flow there. Our analysis provides quantitative support for the conceptual understanding of catenas in cratonic landscapes and provides an endmember reference point in understanding the development of slowly eroding soil landscapes.

A global standard for monitoring coastal wetland vulnerability to accelerated sea-level rise

Sat, 18 May 2013 00:00 -0500

Sea-level rise threatens coastal salt-marshes and mangrove forests around the world, and a key determinant of coastal wetland vulnerability is whether its surface elevation can keep pace with rising sea level. Globally, a large data gap exists because wetland surface and shallow subsurface processes remain unaccounted for by traditional vulnerability assessments using tide gauges. Moreover, those processes vary substantially across wetlands, so modelling platforms require relevant local data. The low-cost, simple, high-precision rod surface-elevation table–marker horizon (RSET-MH) method fills this critical data gap, can be paired with spatial data sets and modelling and is financially and technically accessible to every country with coastal wetlands. Yet, RSET deployment has been limited to a few regions and purposes. A coordinated expansion of monitoring efforts, including development of regional networks that could support data sharing and collaboration, is crucial to adequately inform coastal climate change adaptation policy at several scales.

Periodicity in stem growth and litterfall in tidal freshwater forested wetlands: influence of salinity and drought on nitrogen recycling

Cormier, Nicole ; Krauss, Ken W.; Conner, William H. — Sat, 18 May 2013 00:00 -0500

Many tidally influenced freshwater forested wetlands (tidal swamps) along the south Atlantic coast of the USA are currently undergoing dieback and decline. Salinity often drives conversion of tidal swamps to marsh, especially under conditions of regional drought. During this change, alterations in nitrogen (N) uptake from dominant vegetation or timing of N recycling from the canopy during annual litter senescence may help to facilitate marsh encroachment by providing for greater bioavailable N with small increases in salinity. To monitor these changes along with shifts in stand productivity, we established sites along two tidal swamp landscape transects on the lower reaches of the Waccamaw River (South Carolina) and Savannah River (Georgia) representing freshwater (≤0.1 psu), low oligohaline (1.1–1.6 psu), and high oligohaline (2.6–4.1 psu) stands; the latter stands have active marsh encroachment. Aboveground tree productivity was monitored on all sites through monthly litterfall collection and dendrometer band measurements from 2005 to 2009. Litterfall samples were pooled by season and analyzed for total N and carbon (C). On average between the two rivers, freshwater, low oligohaline, and high oligohaline tidal swamps returned 8,126, 3,831, and 1,471 mg N m⁻² year⁻¹, respectively, to the forest floor through litterfall, with differences related to total litterfall volume rather than foliar N concentrations. High oligohaline sites were most inconsistent in patterns of foliar N concentrations and N loading from the canopy. Leaf N content generally decreased and foliar C/N generally increased with salinization (excepting one site), with all sites being fairly inefficient in resorbing N from leaves prior to senescence. Stands with higher salinity also had greater flood frequency and duration, lower basal area increments, lower tree densities, higher numbers of dead or dying trees, and much reduced leaf litter fall (103 vs. 624 g m⁻² year⁻¹) over the five study years. Our data suggest that alternative processes, such as the rate of decomposition and potential for N mineralization, on tidal swamp sites undergoing salinity-induced state change may be more important for controlling N biogeochemical cycling in soils than differences among sites in N loading via litterfall.

Bathymetric surveys of the Kootenai River near Bonners Ferry, Idaho, water year 2011

Fosness, Ryan L. — Sat, 18 May 2013 00:00 -0500

In 2009, the Kootenai Tribe of Idaho released and implemented the Kootenai River Habitat Restoration Master Plan. This plan aimed to restore, enhance, and maintain the Kootenai River habitat and landscape to support and sustain habitat conditions for aquatic species and animal populations. In support of these restoration efforts, the U.S. Geological Survey, in cooperation with the Kootenai Tribe of Idaho, conducted high-resolution multibeam echosounder bathymetric surveys in May, June, and July 2011, as a baseline bathymetric monitoring survey on the Kootenai River near Bonners Ferry, Idaho. Three channel patterns or reaches exist in the study area—braided, meander, and a transitional zone connecting the braided and meander reaches. Bathymetric data were collected at three study areas in 2011 to provide: (1) surveys in unmapped portions of the meander reach; (2) monitoring of the presence and extent of sand along planned lines within a section of the meander reach; and (3) monitoring aggradation and degradation of the channel bed at specific cross sections within the braided reach and transitional zone. The bathymetric data will be used to update and verify flow models, calibrate and verify sediment transport modeling efforts, and aid in the biological assessment in support of the Kootenai River Habitat Restoration Master Plan. The data and planned lines for each study reach were produced in ASCII XYZ format supported by most geospatial software.

Methods and spatial extent of geophysical Investigations, Mono Lake, California, 2009 to 2011

Sat, 18 May 2013 00:00 -0500

This report summarizes the methods and spatial extent of geophysical surveys conducted on Mono Lake and Paoha Island by U.S. Geological Survey during 2009 and 2011. The surveys include acquisition of new high resolution seismic reflection data, shipborne high resolution magnetic data, and ground magnetic and gravity data on Paoha Island. Several trials to acquire swath bathymetry and side scan sonar were conducted, but were largely unsuccessful likely due to physical properties of the water column and (or) physical properites of the highly organic bottom sediment.

Analysis of environmental setting, surface-water and groundwater data, and data gaps for the Citizen Potawatomi Nation Tribal Jurisdictional Area, Oklahoma, through 2011

Sat, 18 May 2013 00:00 -0500

The Citizen Potawatomi Nation Tribal Jurisdictional Area, consisting of approximately 960 square miles in parts of three counties in central Oklahoma, has an abundance of water resources, being underlain by three principal aquifers (alluvial/terrace, Central Oklahoma, and Vamoosa-Ada), bordered by two major rivers (North Canadian and Canadian), and has several smaller drainages. The Central Oklahoma aquifer (also referred to as the Garber-Wellington aquifer) underlies approximately 3,000 square miles in central Oklahoma in parts of Cleveland, Logan, Lincoln, Oklahoma, and Pottawatomie Counties and much of the tribal jurisdictional area. Water from these aquifers is used for municipal, industrial, commercial, agricultural, and domestic supplies. The approximately 115,000 people living in this area used an estimated 4.41 million gallons of fresh groundwater, 12.12 million gallons of fresh surface water, and 8.15 million gallons of saline groundwater per day in 2005. Approximately 8.48, 2.65, 2.24, 1.55, 0.83, and 0.81 million gallons per day of that water were used for domestic, livestock, commercial, industrial, crop irrigation, and thermoelectric purposes, respectively. Approximately one-third of the water used in 2005 was saline water produced during petroleum production. Future changes in use of freshwater in this area will be affected primarily by changes in population and agricultural practices. Future changes in saline water use will be affected substantially by changes in petroleum production. Parts of the area periodically are subject to flooding and severe droughts that can limit available water resources, particularly during summers, when water use increases and streamflows substantially decrease. Most of the area is characterized by rural types of land cover such as grassland, pasture/hay fields, and deciduous forest, which may limit negative effects on water quality by human activities because of lesser emissions of man-made chemicals on such areas than in more urbanized areas. Much of the water in the area is of good quality, though some parts of this area have water quality impaired by very hard surface water and groundwater; large chloride concentrations in some smaller streams; relatively large concentrations of nutrients and counts of fecal-indicator bacteria in the North Canadian River; and chloride, iron, manganese, and uranium concentrations that exceed primary or secondary drinking-water standards in water samples collected from small numbers of wells. Substantial amounts of hydrologic and water-quality data have been collected in much of this area, but there are gaps in those data caused by relatively few streamflow-gaging stations, uneven distribution of surface-water quality sampling sites, lack of surface-water quality sampling at high-flow and low-flow conditions, and lack of a regularly measured and sampled groundwater network. This report summarizes existing water-use, climatic, geographic, hydrologic, and water-quality data and describes several means of filling gaps in hydrologic data for this area.

Investigation of the structure and lithology of bedrock concealed by basin fill, using ground-based magnetic-field-profile data acquired in the San Rafael Basin, southeastern Arizona

Bultman, Mark W. — Sat, 18 May 2013 00:00 -0500

Data on the Earth’s total-intensity magnetic field acquired near ground level and at measurement intervals as small as 1 m include information on the spatial distribution of nearsurface magnetic dipoles that in many cases are unique to a specific lithology. Such spatial information is expressed in the texture (physical appearance or characteristics) of the data at scales of hundreds of meters to kilometers. These magnetic textures are characterized by several descriptive statistics, their power spectrum, and their multifractal spectrum. On the basis of a graphical comparison and textural characterization, ground-based magnetic-field profile data can be used to estimate bedrock lithology concealed by as much as 100 m of basin fill in some cases, information that is especially important in assessing and exploring for concealed mineral deposits. I demonstrate that multifractal spectra of ground-based magnetic-field-profile data can be used to differentiate exposed lithologies and that the shape and position of the multifractal spectrum of the ground-based magnetic-field-profile of concealed lithologies can be matched to the upward-continued multifractal spectrum of an exposed lithology to help distinguish the concealed lithology. In addition, ground-based magnetic-field-profile data also detect minute differences in the magnetic susceptibility of rocks over small horizontal and vertical distances and so can be used for precise modeling of bedrock geometry and structure, even when that bedrock is concealed by 100 m or more of nonmagnetic basin fill. Such data contain valuable geologic information on the bedrock concealed by basin fill that may not be so visible in aeromagnetic data, including areas of hydrothermal alteration, faults, and other bedrock structures. Interpretation of these data in the San Rafael Basin, southeastern Arizona, has yielded results for estimating concealed lithologies, concealed structural geology, and a concealed potential mineral-resource target.

Surface-water and groundwater interactions in an extensively mined watershed, upper Schuylkill River, Pennsylvania, USA

Fri, 17 May 2013 00:00 -0500

Streams crossing underground coal mines may lose flow, while abandoned mine drainage (AMD) restores flow downstream. During 2005-12, discharge from the Pine Knot Mine Tunnel, the largest AMD source in the upper Schuylkill River Basin, had near-neutral pH and elevated concentrations of iron, manganese, and sulfate. Discharge from the tunnel responded rapidly to recharge but exhibited a prolonged recession compared to nearby streams, consistent with rapid infiltration and slow release of groundwater from the mine. Downstream of the AMD, dissolved iron was attenuated by oxidation and precipitation while dissolved CO2 degassed and pH increased. During high-flow conditions, the AMD and downstream waters exhibited decreased pH, iron, and sulfate with increased acidity that were modeled by mixing net-alkaline AMD with recharge or runoff having low ionic strength and low pH. Attenuation of dissolved iron within the river was least effective during high-flow conditions because of decreased transport time coupled with inhibitory effects of low pH on oxidation kinetics. A numerical model of groundwater flow was calibrated using groundwater levels in the Pine Knot Mine and discharge data for the Pine Knot Mine Tunnel and the West Branch Schuylkill River during a snowmelt event in January 2012. Although the calibrated model indicated substantial recharge to the mine complex took place away from streams, simulation of rapid changes in mine pool level and tunnel discharge during a high flow event in May 2012 required a source of direct recharge to the Pine Knot Mine. Such recharge produced small changes in mine pool level and rapid changes in tunnel flow rate because of extensive unsaturated storage capacity and high transmissivity within the mine complex. Thus, elimination of stream leakage could have a small effect on the annual discharge from the tunnel, but a large effect on peak discharge and associated water quality in streams.

Low footwall accelerations and variable surface rupture behavior on the Fort Sage Mountains fault, northeast California

Fri, 17 May 2013 00:00 -0500

The Fort Sage Mountains fault zone is a normal fault in the Walker Lane of the western Basin and Range that produced a small surface rupture (<20 cm) during an M_L 5.6 earthquake in 1950. We investigate the paleoseismic history of the Fort Sage fault and find evidence for two paleoearthquakes with surface displacements much larger than those observed in 1950. Rupture of the Fort Sage fault ∼5.6 ka resulted in surface displacements of at least 0.8–1.5 m, implying earthquake moment magnitudes (M_w) of 6.7–7.1. An older rupture at ∼20.5 ka displaced the ground at least 1.5 m, implying an earthquake of M_w 6.8–7.1. A field of precariously balanced rocks (PBRs) is located less than 1 km from the surface‐rupture trace of this Holocene‐active normal fault. Ground‐motion prediction equations (GMPEs) predict peak ground accelerations (PGAs) of 0.2–0.3g for the 1950 rupture and 0.3–0.5g for the ∼5.6 ka paleoearthquake one kilometer from the fault‐surface trace, yet field tests indicate that the Fort Sage PBRs will be toppled by PGAs between 0.1–0.3g. We discuss the paleoseismic history of the Fort Sage fault in the context of the nearby PBRs, GMPEs, and probabilistic seismic hazard maps for extensional regimes. If the Fort Sage PBRs are older than the mid‐Holocene rupture on the Fort Sage fault zone, this implies that current GMPEs may overestimate near‐fault footwall ground motions at this site.

Lake Mead--clear and vital

Wessells, Stephen M.; Rosen, Michael — Fri, 17 May 2013 00:00 -0500

“Lake Mead – Clear and Vital” is a 13 minute documentary relating the crucial role of science in maintaining high water quality in Lake Mead. The program was produced coincident with release of the Lakes Mead and Mohave Circular a USGS publication covering past and on-going research in the lakes and tributaries of the Lake Mead National Recreation Area.

Multiscale sagebrush rangeland habitat modeling in the Gunnison Basin of Colorado

Homer, Collin G.; Aldridge, Cameron L.; Meyer, Debra K.; Schell, Spencer J. — Fri, 17 May 2013 00:00 -0500

North American sagebrush-steppe ecosystems have decreased by about 50 percent since European settlement. As a result, sagebrush-steppe dependent species, such as the Gunnison sage-grouse, have experienced drastic range contractions and population declines. Coordinated ecosystem-wide research, integrated with monitoring and management activities, is needed to help maintain existing sagebrush habitats; however, products that accurately model and map sagebrush habitats in detail over the Gunnison Basin in Colorado are still unavailable. The goal of this project is to provide a rigorous large-area sagebrush habitat classification and inventory withstatistically validated products and estimates of precision across the Gunnison Basin. This research employs a combination of methods, including (1) modeling sagebrush rangeland as a series of independent objective components that can be combined and customized by any user at multiple spatial scales; (2) collecting ground measured plot data on 2.4-meter QuickBird satellite imagery in the same season the imagery is acquired; (3) modeling of ground measured data on 2.4-meter imagery to maximize subsequent extrapolation; (4) acquiring multiple seasons (spring, summer, and fall) of Landsat Thematic Mapper imagery (30-meter) for optimal modeling; (5) using regression tree classification technology that optimizesdata mining of multiple image dates, ratios, and bands with ancillary data to extrapolate ground training data to coarser resolution Landsat Thematic Mapper; and 6) employing accuracy assessment of model predictions to enable users to understand their dependencies. Results include the prediction of four primary components including percent bare ground, percent herbaceous, percent shrub, and percent litter, and four secondary components including percent sagebrush (Artemisia spp.), percent big sagebrush (Artemisia tridentata), percent Wyoming sagebrush (Artemisia tridentata wyomingensis), and shrub height (centimeters). Results were validated with an independent accuracy assessment, with root mean square error values ranging from 3.5 (percent big sagebrush) to 10.8 (percent bare ground) at the QuickBird scale, and from 4.5 (percent Wyoming sagebrush) to 12.4 (percent herbaceous) at the full Landsat scale. These results offer significant improvement in sagebrush ecosystem quantification across the Gunnison Basin, and also provide maximum flexibility to users toemploy for a wide variety of applications. Further refinementof these remote sensing component predictions in the future will be most likely achieved by focusing on more extensive ground plot sampling, employing new high and moderate-resolution satellite sensors that offer additional spectral bands for vegetation discrimination, and capturing more dates of satellite imagery to better represent phenological variation.

Behavior and movement of adult summer steelhead following collection and release, lower Cowlitz River, Washington, 2012--2013

Fri, 17 May 2013 00:00 -0500

Historically, adult summer steelhead Oncorhynchus mykiss returning to hatcheries on the lower Cowlitz River were sometimes transported and released in the river (recycled) to provide additional angling opportunity for the popular sport fishery in the basin. However, this practice has not been used in recent years because of concerns associated with interactions between hatchery fish and wild fish. Fishery managers were interested in resuming recycling but lacked information regarding effects of this practice on wild steelhead so we conducted a study during 2012–2013 to: (1) enumerate recycled steelhead that returned to the hatchery or were removed by anglers; and (2) determine if steelhead that were not removed from the river remained in the system where they could interact with wild fish. During June–August 2012, a total of 549 summer steelhead were captured at the Cowlitz Salmon Hatchery, tagged, and released downstream near the Interstate 5 Bridge. All recycled steelhead were tagged with a white Floy® tag and opercle-punched; 109 (20 percent) of these fish also were radio-tagged. All adult steelhead that return to the hatchery were handled by hatchery staff so recycled steelhead that returned to the hatchery were enumerated daily. A creel survey and voluntary angler reports were used to determine the number of recycled steelhead that were caught by anglers. We established three fixed telemetry monitoring sites on the mainstem Cowlitz River and eight additional sites were deployed on tributaries to the lower Cowlitz River where wild winter steelhead are known to spawn. We also conducted mobile tracking from a boat during October 2012, November 2012, and January 2013 to locate radio-tagged fish. A total of 10,722 summer steelhead were captured at the Cowlitz Salmon Hatchery in 2012, which was the largest return since 2008. River flows during much of the study period were similar to 2008–2011 average flows, however, high-flow periods in July and November 2012 were nearly twice as high as the 2008–2011 average flows. We determined that 50 percent (273 fish) of the recycled steelhead returned to the hatchery and 18 percent (102 fish) of the recycled steelhead were caught by anglers. Most (243 fish; 89 percent) of the recycled steelhead that returned to the hatchery were recollected during July–August. The average elapsed time from release to recapture at the hatchery was 9 days (d) and 72 percent (182 fish) of the fish returned to the hatchery within 14 d of release. These trends were similar for recycled steelhead that were caught by anglers. Most fish were caught during July–August and the median time from release to capture was 10 d. We determined that 65 percent (70 fish) of the angler-caught fish returned to the hatchery within 14 d of release. River flows appeared to affect both hatchery returns and angler catch. The daily number of recycled steelhead that were recollected at the hatchery were low during periods when river flows were decreasing and high during periods when river flows were increasing. Conversely, daily angler catch of recycled steelhead generally was low when flows were increasing and high when flows were decreasing. We determined that 32 percent of the recycled steelhead (174 fish) were not removed from the lower Cowlitz River, based on observations from hatchery returns and angler reports, but results from the radio-tagged fish were insightful for understanding what may have happened to these fish. By comparison, we determined that 24 percent of the radio-tagged fish were not known to have been removed from the river. We determined that 12 percent of these fish were actively moving in the lower Cowlitz River during October 2012–January 2013. None of the radio-tagged fish were detected in tributaries during the study period except for a single fish that spent approximately 7 d in the Toutle River during early September. During October 2012–January 2013, 10 percent of the radio-tags from recycled steelhead were detected near popular fishing areas, and 2 percent of the radio-tagged steelhead were never detected during the study period. We suspect that a large proportion of these fish may have been harvested and not reported, or died. Detection patterns of radio-tagged steelhead showed that most fish (82 percent) moved upstream from the release site and were detected at the Trout Hatchery and the Barrier Dam sites. The median time from release to detection at these sites was 3.7 d and many of these fish made multiple trips between the two sites. Nearly one-third (29 percent) of the recycled steelhead that were detected at the Trout Hatchery and the Barrier Dam made at least two trips between the sites and some fish made as many as six trips. Radio-tagged fish that remained in the lower Cowlitz River during the spawning period (December 2012–January 2013) were observed in the river reach between the mouth of Ostrander Creek (river mile 10) and the Trout Hatchery (river mile 44). During this study, we collected data on opercle punch regrowth rates to understand the temporal effectiveness of this marking technique. We took opercle measurements for a total of 190 fish during the study. Fresh opercle punches were measured for 63 fish at the time of marking, and the remaining 127 fish were measured when fish returned to the hatchery. We determined that opercle punches remained open for about 30 d. The holes appeared to regrow slowly in the first 20 d after marking, but regrowth accelerated during the 20–30 d post-marking period. After 30 d, all opercle punches that we observed had completely closed due to tissue regrowth. Our study showed that a large proportion (68 percent) of the recycled steelhead were removed from the lower Cowlitz River. These fish primarily entered the hatchery or were caught by anglers within 14 d of release, which suggests that they present minimal risk to wild fish in the system. However, the remaining fish (32 percent) could not be accounted for, which may complicate fisheries management decisions associated with recycling summer steelhead. Findings from the radiotelemetry study suggest that unreported harvest or mortality could explain a large proportion of those fish that were not reported as having been removed from the river. Furthermore, intensive monitoring of the key spawning tributaries failed to detect a single fish during the spawning period. These findings were supported by observations from weir traps operated by the Washington Department of Fish and Wildlife. Our findings indicate that additional research may be warranted to further examine the effects of recycling hatchery summer steelhead in the lower Cowlitz River.

Coastal topography–Northeast Atlantic coast, post-hurricane Sandy, 2012

Thu, 16 May 2013 00:00 -0500

This Data Series contains lidar-derived bare-earth (BE) topography, dune elevations, and mean-high-water shoreline position datasets for most sandy beaches for Fire Island, New York, and from Cape Henlopen, Delaware to Cape Lookout, North Carolina. The data were acquired post-Hurricane Sandy, which made landfall as an extratropical cyclone on October 29, 2012.

The U.S. Geological Survey Climate Geo Data Portal: an integrated broker for climate and geospatial data

Blodgett, David L. — Thu, 16 May 2013 00:00 -0500

The increasing availability of downscaled climate projections and other data products that summarize or predict climate conditions, is making climate data use more common in research and management. Scientists and decisionmakers often need to construct ensembles and compare climate hindcasts and future projections for particular spatial areas. These tasks generally require an investigator to procure all datasets of interest en masse, integrate the various data formats and representations into commonly accessible and comparable formats, and then extract the subsets of the datasets that are actually of interest. This process can be challenging and time intensive due to data-transfer, -storage, and(or) -processing limits, or unfamiliarity with methods of accessing climate data. Data management for modeling and assessing the impacts of future climate conditions is also becoming increasingly expensive due to the size of the datasets. The Climate Geo Data Portal (http://cida.usgs.gov/climate/gdp/) addresses these limitations, making access to numerous climate datasets for particular areas of interest a simple and efficient task.

Seventy-five years of science—The U.S. Geological Survey’s Western Fisheries Research Center

Wedemeyer, Gary A. — Thu, 16 May 2013 00:00 -0500

As of January 2010, 75 years have elapsed since Dr. Frederic Fish initiated the pioneering research program that would evolve into today’s Western Fisheries Research Center (WFRC). Fish began his research working alone in the basement of the recently opened Fisheries Biological Laboratory on Lake Union in Seattle, Washington. WFRC’s research began under the aegis of the U.S. Fish and Wildlife Service and ends its first 75 years as part of the U.S. Geological Survey with a staff of more than 150 biologists and support personnel and a heritage of fundamental research that has made important contributions to our understanding of the biology and ecology of the economically important fish and fish populations of the Nation. Although the current staff may rarely stop to think about it, WFRC’s antecedents extend many years into the past and are intimately involved with the history of fisheries conservation in the Western United States. Thus, WFRC Director Lyman Thorsteinson asked me to write the story of this laboratory “while there are still a few of you around who were here for some of the earlier years” to document the rich history and culture of WFRC by recognizing its many famous scientists and their achievements. This historyalso would help document WFRC’s research ‘footprint’ in the Western United States and its strategic directions. Center Director Thorsteinson concluded that WFRC’s heritage told by an emeritus scientist also would add a texture of legitimacy based on personal knowledge that will all-to-soon be lost to the WFRC and to the USGS. The WFRC story is important for the future as well as for historical reasons. It describes how we got to the place we are today by documenting the origin, original mission, and our evolving role in response to the constantly changing technical information requirements of new environmental legislation and organizational decision-making. The WFRC research program owes its existence to the policy requirements of Federal conservation legislation originating with the construction of Grand Coulee Dam in 1933. The research program was shaped by laws enacted in subsequent years such as the Federal Water Pollution Control Act (1972), National Environmental Policy Act (1973), Endangered Species Act (1974), and Northwest Power Planning Act (1980), to name only a few. The WFRC has not been constrained by direct management or regulatory responsibility for a particular fishery (such as providing sustainable catch limits data to a resource management structure). Thus, WFRC has been able to concentrate on scientific pursuits and information needs required by contemporary environmental legislation. Over the years, we have pioneered in several important areas of fisheries research including the diagnoses and control of diseases in economically important fish, effects of environmental alterations on the physiological quality and survival of Pacific salmon released from federal mitigation hatcheries, applications in biotelemetry, and the bioenergetics of predator-prey interactions in the Columbia River. The WFRC of today is a widely distributed organization in the Western United States. Knowledge of the historical connections and accomplishments of our predecessors is important beyond the sense of pride and unity it instills in the WFRC family of today. For example, a discerning reader will note the evolution of WFRC’s research from a single disciplinary focus (early era—hatchery disease problems), to multiple disciplines (middle to late era—species, populations, habitats; threatened and endangered species), to the present era (multidisciplinary and with increasing process focus). For the benefit of the current WFRC staff, more emphasis has been placed on the early years rather than on the present day because people are quite naturally more familiar with the recent past than with the research done during the first decades of WFRC’s existence. By every rational measure, the WFRC has evolved into a fisheries research organization well positioned to provide the biological information needed to support the continued conservation and management of our Nation’s living aquatic natural resources. The high standard of excellence that connects WFRC’s past to our present research program provides a firm foundation on which to base the work yet to be done. In another 75 years, WFRC will undoubtedly be a very different place than it is today, but its evolution will be forever rooted in the story of the research and of the people related here. More about the diverse fisheries research projects WFRC scientists are conducting today is available at WFRC’s website: http://wfrc.usgs.gov/.

Geochemical results from stream-water and stream-sediment samples collected in Colorado and New Mexico

Thu, 16 May 2013 00:00 -0500

Scientists from the U.S. Geological Survey are studying the relationship between watershed lithology and stream-water chemistry. As part of this effort, 60 stream-water samples and 43 corresponding stream-sediment samples were collected in 2010 and 2011 from locations in Colorado and New Mexico. Sample sites were selected from small to midsize watersheds composed of a high percentage of one rock type or geologic unit. Stream-water and stream-sediment samples were collected, processed, preserved, and analyzed in a consistent manner. This report releases geochemical data for this phase of the study.

Determination of selenium in fish from designated critical habitat in the Gunnison River, Colorado, March through October, 2012

May, Thomas W.; Walther, Michael J. — Thu, 16 May 2013 00:00 -0500

This report presents results for the summer 2012 sam-pling of muscle plugs from common carp (Cyprinus carpio), bonytail chub (Gila elegans), Colorado pikeminnow (Ptycho-cheilus lucius), and razorback suckers (Xyrauchen texanus) inhabiting critical habitat in the Gunnison River in western Colorado. Total selenium in fish muscle plugs was determinedby instrumental neutron activation analysis. Total selenium concentrations (range and mean ± standard deviation) in micrograms per gram dry weight were 6.0 to 10.7, 8.8 ± 1.3 for common carp; 2.9 to 8.7, 5.6 ± 2.4 for Colorado pikemin-now; and 1.4 to 7.3, 3.4 ± 2.7 for razorback sucker. The selenium concentration for one bonytail chub sample was 0.8 micrograms per gram dry weight. Selenium concentrations in muscle plugs from 1 Colorado pikeminnow and 12 common carp exceeded the 8 micrograms per gram dry weight toxicity guideline for selenium in fish muscle tissue.

Estimating irrigation water use in the humid eastern United States

Levin, Sara B.; Zarriello, Phillip J. — Thu, 16 May 2013 00:00 -0500

Accurate accounting of irrigation water use is an important part of the U.S. Geological Survey National Water-Use Information Program and the WaterSMART initiative to help maintain sustainable water resources in the Nation. Irrigation water use in the humid eastern United States is not well characterized because of inadequate reporting and wide variability associated with climate, soils, crops, and farming practices. To better understand irrigation water use in the eastern United States, two types of predictive models were developed and compared by using metered irrigation water-use data for corn, cotton, peanut, and soybean crops in Georgia and turf farms in Rhode Island. Reliable metered irrigation data were limited to these areas. The first predictive model that was developed uses logistic regression to predict the occurrence of irrigation on the basis of antecedent climate conditions. Logistic regression equations were developed for corn, cotton, peanut, and soybean crops by using weekly irrigation water-use data from 36 metered sites in Georgia in 2009 and 2010 and turf farms in Rhode Island from 2000 to 2004. For the weeks when irrigation was predicted to take place, the irrigation water-use volume was estimated by multiplying the average metered irrigation application rate by the irrigated acreage for a given crop. The second predictive model that was developed is a crop-water-demand model that uses a daily soil water balance to estimate the water needs of a crop on a given day based on climate, soil, and plant properties. Crop-water-demand models were developed independently of reported irrigation water-use practices and relied on knowledge of plant properties that are available in the literature. Both modeling approaches require accurate accounting of irrigated area and crop type to estimate total irrigation water use. Water-use estimates from both modeling methods were compared to the metered irrigation data from Rhode Island and Georgia that were used to develop the models as well as two independent validation datasets from Georgia and Virginia that were not used in model development. Irrigation water-use estimates from the logistic regression method more closely matched mean reported irrigation rates than estimates from the crop-water-demand model when compared to the irrigation data used to develop the equations. The root mean squared errors (RMSEs) for the logistic regression estimates of mean annual irrigation ranged from 0.3 to 2.0 inches (in.) for the five crop types; RMSEs for the crop-water-demand models ranged from 1.4 to 3.9 in. However, when the models were applied and compared to the independent validation datasets from southwest Georgia from 2010, and from Virginia from 1999 to 2007, the crop-water-demand model estimates were as good as or better at predicting the mean irrigation volume than the logistic regression models for most crop types. RMSEs for logistic regression estimates of mean annual irrigation ranged from 1.0 to 7.0 in. for validation data from Georgia and from 1.8 to 4.9 in. for validation data from Virginia; RMSEs for crop-water-demand model estimates ranged from 2.1 to 5.8 in. for Georgia data and from 2.0 to 3.9 in. for Virginia data. In general, regression-based models performed better in areas that had quality daily or weekly irrigation data from which the regression equations were developed; however, the regression models were less reliable than the crop-water-demand models when applied outside the area for which they were developed. In most eastern coastal states that do not have quality irrigation data, the crop-water-demand model can be used more reliably. The development of predictive models of irrigation water use in this study was hindered by a lack of quality irrigation data. Many mid-Atlantic and New England states do not require irrigation water use to be reported. A survey of irrigation data from 14 eastern coastal states from Maine to Georgia indicated that, with the exception of the data in Georgia, irrigation data in the states that do require reporting commonly did not contain requisite ancillary information such as irrigated area or crop type, lacked precision, or were at an aggregated temporal scale making them unsuitable for use in the development of predictive models. Confidence in the reliability of either modeling method is affected by uncertainty in the reported data from which the models were developed or validated. Only through additional collection of quality data and further study can the accuracy and uncertainty of irrigation water-use estimates be improved in the humid eastern United States.

Evaluation of the potential for hysteresis in index-velocity ratings for the Chicago Sanitary and Ship Canal near Lemont, Illinois

Thu, 16 May 2013 00:00 -0500

The U.S. Geological Survey (USGS) is responsible for monitoring flows in the Chicago Sanitary and Ship Canal (CSSC) near Lemont, Illinois, as a part of the Lake Michigan Diversion Accounting overseen by the U.S. Army Corps of Engineers, Chicago District. Lake Michigan Diversion Accounting is mandated by a U.S. Supreme Court decree in order to monitor, and limit, the State of Illinois’ annual diversion of Great Lakes water through the manmade CSSC. Every 5 years, a technical review committee consisting of practicing engineers and academics reviews USGS streamgaging practices in the CSSC near Lemont, Illinois. The sixth technical review committee expressed concern that the index-velocity rating—the method used to estimate mean cross-sectional velocity from a measured index velocity—may be subject to hysteresis at this site because of the unique, unsteady hydraulics of the canal. Hysteresis in index-velocity ratings can occur at sites where the flow distribution in the channel varies significantly between the rising and falling limbs of the hydrograph for the same discharge. Presently, hysteresis in index-velocity ratings has been documented only in tidally affected sites. This report investigates whether hysteresis can occur at this nontidal site, and the conditions under which it is likely to occur, by using both a theoretical approach and a three-dimensional hydrodynamic model. The theoretical analysis investigated the conditions required for hysteresis in the index-velocity rating, and the modeling analysis focused on the effect of the timing of the inflows from the CSSC and the Cal-Sag Channel on the potential for hysteresis and whether highly resolved simulations of actual high-flow events show any evidence of hysteresis. Based on both a theoretical analysis using observed historical data and an analysis using a three-dimensional hydrodynamic model, there is no conclusive evidence for the existence of hysteresis in the index-velocity rating at the USGS streamgage on the CSSC near Lemont, Illinois. Although the theoretical analysis indicated the possibility of hysteresis at this site, the hydrodynamic conditions required to generate hysteresis are not present at this site based on historical data. Ongoing streamgaging practices at this site will use the information in this report and include periodic assessment of the index-velocity rating for any signs of hysteresis that might result from future changes to the operation of this manmade canal.

Using diets to reveal overlap and egg predation among benthivorous fishes in Lake Michigan

Wed, 15 May 2013 00:00 -0500

Ecological stability in the Laurentian Great Lakes has been altered by nonindigenous species, such as the Round Goby Neogobius melanostomus and dreissenid mussels, and by declines in native amphipods Diporeia spp. We evaluated whether these changes could influence diet overlap between three benthivorous fishes (Slimy Sculpin Cottus cognatus, Deepwater Sculpin Myoxocephalus thompsonii, and Round Goby) and whether predation on eggs of native species was occurring. We examined diets of fish collected at depths of 69–128 m in Lake Michigan offshore of Frankfort and Muskegon, Michigan, and Two Rivers and Sturgeon Bay, Wisconsin, during January–May 2009 and 2010. Important prey (by dry weight proportion and by percent frequency of occurrence) for Slimy Sculpin were Mysis (0.34; 45%), Diporeia (0.16; 34%), and Limnocalanus macrurus (0.22; 68%); important prey for Deepwater Sculpin were Mysis (0.74; 92%) and Diporeia (0.16; 54%). Round Goby consumed mainly bivalves (i.e., dreissenids: 0.68; 95%) and Mysis (0.15; 37%). The two sculpin species consumed the eggs of Bloaters Coregonus hoyi (Slimy Sculpin: 0.04, 11%; Deepwater Sculpin: 0.02, 7%) and the eggs of Deepwater Sculpin (Slimy Sculpin: 0.03, 13%; Deepwater Sculpin: 0.05, 16%) during February–May at all sites. Round Goby also consumed eggs of these species but at lower levels (≤0.01; <1%). Diet overlap was identified between sculpin species at Frankfort and Sturgeon Bay, suggesting possible interspecific competition, but their diets did not overlap at Two Rivers; diet overlap was never observed between Round Goby and either sculpin species. Given that (1) diet overlap varied by site and (2) diet proportions varied spatially more than temporally, benthivores appear to be exhibiting localized responses to recent ecological changes. Overall, these results reveal that egg predation and interspecific competition could be important interactions to consider in future examinations of the population dynamics of these species or in ecosystem models that forecast how fisheries will respond to possible perturbations or management scenarios.

Total dissolved gas and water temperature in the lower Columbia River, Oregon and Washington, water year 2012—Quality-assurance data and comparison to water-quality standards

Tanner, Dwight Q.; Bragg, Heather M.; Johnston, Matthew W. — Wed, 15 May 2013 00:00 -0500

Significant Findings: Air is entrained in water as it is flows through the spillways of dams, which causes an increase in the concentration of total dissolved gas in the water downstream from the dams. The elevated concentrations of total dissolved gas can adversely affect fish and other freshwater aquatic life. An analysis of total-dissolved-gas and water-temperature data collected at eight monitoring stations on the lower Columbia River in Oregon and Washington in 2012 indicated the following: *During parts of the spill season of April–August 2012, hourly values of total dissolved gas (TDG) were larger than 115-percent saturation for the forebay stations (John Day navigation lock, The Dalles forebay, and Bonneville forebay) and the Camas station. Hourly values of total dissolved gas were larger than 120-percent saturation for the tailwater stations (John Day Dam tailwater, The Dalles tailwater, Cascade Island, and Warrendale). *During parts of August and September 2012, hourly water temperatures were greater than 20°C (degrees Celsius) at the eight stations on the lower Columbia River. According to the State of Oregon water-temperature standard, the 7-day average of the daily maximum temperature of the lower Columbia River should not exceed 20°C; Washington regulations state that the 1-day maximum should not exceed 20°C as a result of human activities. *Of the 98 laboratory TDG checks that were performed on instruments after field deployment, all were within ± 0.7-percent saturation. *All but 1 of the 83 field checks of TDG sensors with a secondary standard were within ± 1.0-percent saturation after 3–4 weeks of deployment in the river. All 88 of the field checks of baro-metric pressure were within ±1 millimeter of mercury of a primary standard, and all 85 water-temperature field checks were within ±0.2°C of a secondary standard. *For the eight monitoring stations in water year 2012, a total of 97.0 percent of the TDG data were received in real time and were within 1-percent saturation of the expected value on the ba-sis of calibration data, replicate quality-control measurements in the river, and comparison to ambient river conditions at adjacent sites. Data received from the Cascade Island site were only 77.8 percent complete because the equipment was destroyed by high water. The other stations ranged from 98.9 to 100.0 percent complete.

Evaporative losses from soils covered by physical and different types of biological soil crusts

Chamizo, S. ; Cantón, Y. ; Domingo, F. ; Belnap, J. — Tue, 14 May 2013 00:00 -0500

Evaporation of soil moisture is one of the most important processes affecting water availability in semiarid ecosystems. Biological soil crusts, which are widely distributed ground cover in these ecosystems, play a recognized role on water processes. Where they roughen surfaces, water residence time and thus infiltration can be greatly enhanced, whereas their ability to clog soil pores or cap the soil surface when wetted can greatly decrease infiltration rate, thus affecting evaporative losses. In this work, we compared evaporation in soils covered by physical crusts, biological crusts in different developmental stages and in the soils underlying the different biological crust types. Our results show that during the time of the highest evaporation (Day 1), there was no difference among any of the crust types or the soils underlying them. On Day 2, when soil moisture was moderately low (11%), evaporation was slightly higher in well-developed biological soil crusts than in physical or poorly developed biological soil crusts. However, crust removal did not cause significant changes in evaporation compared with the respective soil crust type. These results suggest that the small differences we observed in evaporation among crust types could be caused by differences in the properties of the soil underneath the biological crusts. At low soil moisture (<6%), there was no difference in evaporation among crust types or the underlying soils. Water loss for the complete evaporative cycle (from saturation to dry soil) was similar in both crusted and scraped soils. Therefore, we conclude that for the specific crust and soil types tested, the presence or the type of biological soil crust did not greatly modify evaporation with respect to physical crusts or scraped soils.

Factors influencing storm-generated suspended-sediment concentrations and loads in four basins of contrasting land use, humid-tropical Puerto Rico

Gellis, Allen C. — Tue, 14 May 2013 00:00 -0500

The significant characteristics controlling the variability in storm-generated suspended-sediment loads and concentrations were analyzed for four basins of differing land use (forest, pasture, cropland, and urbanizing) in humid-tropical Puerto Rico. Statistical analysis involved stepwise regression on factor scores. The explanatory variables were attributes of flow, hydrograph peaks, and rainfall, categorized into 5 flow periods: (1) the current storm hydrograph, (2) the flow and rainfall since the previous storm event, (3) the previous storm event, (4) 2nd previous storm event, and (5) the 3rd previous storm event. The response variables (storm generated sediment loads and concentrations) were analyzed for three portions of the storm hydrograph: (1) the entire storm, (2) the rising limb, and (3) the recessional limb. Hysteresis differences in sediment concentration between the rising and falling limb were also analyzed using these explanatory variables.

Estimating irrigation water demand using an improved method and optimizing reservoir operation for water supply and hydropower generation: a case study of the Xinfengjiang reservoir in southern China

Wu, Yiping ; Chen, Ji — Tue, 14 May 2013 00:00 -0500

The ever-increasing demand for water due to growth of population and socioeconomic development in the past several decades has posed a worldwide threat to water supply security and to the environmental health of rivers. This study aims to derive reservoir operating rules through establishing a multi-objective optimization model for the Xinfengjiang (XFJ) reservoir in the East River Basin in southern China to minimize water supply deficit and maximize hydropower generation. Additionally, to enhance the estimation of irrigation water demand from the downstream agricultural area of the XFJ reservoir, a conventional method for calculating crop water demand is improved using hydrological model simulation results. Although the optimal reservoir operating rules are derived for the XFJ reservoir with three priority scenarios (water supply only, hydropower generation only, and equal priority), the river environmental health is set as the basic demand no matter which scenario is adopted. The results show that the new rules derived under the three scenarios can improve the reservoir operation for both water supply and hydropower generation when comparing to the historical performance. Moreover, these alternative reservoir operating policies provide the flexibility for the reservoir authority to choose the most appropriate one. Although changing the current operating rules may influence its hydropower-oriented functions, the new rules can be significant to cope with the increasingly prominent water shortage and degradation in the aquatic environment. Overall, our results and methods (improved estimation of irrigation water demand and formulation of the reservoir optimization model) can be useful for local watershed managers and valuable for other researchers worldwide.

Evapotranspiration and water balance of an anthropogenic coastal desert wetland: responses to fire, inflows and salinities

Tue, 14 May 2013 00:00 -0500

Evapotranspiration (ET) and other water balance components were estimated for Cienega de Santa Clara, an anthropogenic brackish wetland in the delta of the Colorado River in Mexico. The marsh is in the Biosphere Reserve of the Upper Gulf of California and Delta of the Colorado River, and supports a high abundance and diversity of wildlife. Over 95% of its water supply originates as agricultural drain water from the USA, sent for disposal in Mexico. This study was conducted from 2009 to 2011, before, during and after a trial run of the Yuma Desalting Plant in the USA, which will divert water from the wetland and replace it with brine from the desalting operation. The goal was to estimate the main components in the water budget to be used in creating management scenarios for this marsh. We used a remote sensing algorithm to estimate ET from meteorological data and Enhanced Vegetation Index values from the Moderate Resolution Imaging Spectrometer (MODIS) sensors on the Terra satellite. ET estimates from the MODIS method were then compared to results from a mass balance of water and salt inflows and outflows over the study period. By both methods, mean annual ET estimates ranged from 2.6 to 3.0 mm d⁻¹, or 50 to 60% of reference ET (ET_o). Water entered at a mean salinity of 2.6 g L⁻¹ TDS and mean salinity in the wetland was 3.73 g L⁻¹ TDS over the 33 month study period. Over an annual cycle, 54% of inflows supported ET while the rest exited the marsh as outflows; however, in winter when ET was low, up to 90% of the inflows exited the marsh. An analysis of ET estimates over the years 2000–2011 showed that annual ET was proportional to the volume of inflows, but was also markedly stimulated by fires. Spring fires in 2006 and 2011 burned off accumulated thatch, resulting in vigorous growth of new leaves and a 30% increase in peak summer ET compared to non-fire years. Following fires, peak summer ET estimates were equal to ET_o, while in non-fire years peak ET was equal to only one-half to two-thirds of ET_o. Over annual cycles, estimated ET was always lower than ET_o, because T. domingensis is dormant in winter and shades the water surface, reducing direct evaporation. Thus, ET of a Typha marsh is likely to be less than an open water surface under most conditions.

Expert assessment of vulnerability of permafrost carbon to climate change

Tue, 14 May 2013 00:00 -0500

Approximately 1700 Pg of soil carbon (C) are stored in the northern circumpolar permafrost zone, more than twice as much C than in the atmosphere. The overall amount, rate, and form of C released to the atmosphere in a warmer world will influence the strength of the permafrost C feedback to climate change. We used a survey to quantify variability in the perception of the vulnerability of permafrost C to climate change. Experts were asked to provide quantitative estimates of permafrost change in response to four scenarios of warming. For the highest warming scenario (RCP 8.5), experts hypothesized that C release from permafrost zone soils could be 19–45 Pg C by 2040, 162–288 Pg C by 2100, and 381–616 Pg C by 2300 in CO₂ equivalent using 100-year CH₄ global warming potential (GWP). These values become 50 % larger using 20-year CH₄ GWP, with a third to a half of expected climate forcing coming from CH₄ even though CH₄ was only 2.3 % of the expected C release. Experts projected that two-thirds of this release could be avoided under the lowest warming scenario (RCP 2.6). These results highlight the potential risk from permafrost thaw and serve to frame a hypothesis about the magnitude of this feedback to climate change. However, the level of emissions proposed here are unlikely to overshadow the impact of fossil fuel burning, which will continue to be the main source of C emissions and climate forcing.

Estimating instream constituent loads using replicate synoptic sampling, Peru Creek, Colorado

Tue, 14 May 2013 00:00 -0500

The synoptic mass balance approach is often used to evaluate constituent mass loading in streams affected by mine drainage. Spatial profiles of constituent mass load are used to identify sources of contamination and prioritize sites for remedial action. This paper presents a field scale study in which replicate synoptic sampling campaigns are used to quantify the aggregate uncertainty in constituent load that arises from (1) laboratory analyses of constituent and tracer concentrations, (2) field sampling error, and (3) temporal variation in concentration from diel constituent cycles and/or source variation. Consideration of these factors represents an advance in the application of the synoptic mass balance approach by placing error bars on estimates of constituent load and by allowing all sources of uncertainty to be quantified in aggregate; previous applications of the approach have provided only point estimates of constituent load and considered only a subset of the possible errors. Given estimates of aggregate uncertainty, site specific data and expert judgement may be used to qualitatively assess the contributions of individual factors to uncertainty. This assessment can be used to guide the collection of additional data to reduce uncertainty. Further, error bars provided by the replicate approach can aid the investigator in the interpretation of spatial loading profiles and the subsequent identification of constituent source areas within the watershed. The replicate sampling approach is applied to Peru Creek, a stream receiving acidic, metal-rich effluent from the Pennsylvania Mine. Other sources of acidity and metals within the study reach include a wetland area adjacent to the mine and tributary inflow from Cinnamon Gulch. Analysis of data collected under low-flow conditions indicates that concentrations of Al, Cd, Cu, Fe, Mn, Pb, and Zn in Peru Creek exceed aquatic life standards. Constituent loading within the study reach is dominated by effluent from the Pennsylvania Mine, with over 50% of the Cd, Cu, Fe, Mn, and Zn loads attributable to a collapsed adit near the top of the study reach. These estimates of mass load may underestimate the effect of the Pennsylvania Mine as leakage from underground mine workings may contribute to metal loads that are currently attributed to the wetland area. This potential leakage confounds the evaluation of remedial options and additional research is needed to determine the magnitude and location of the leakage.

Field measurement of basal forces generated by erosive debris flows

McCoy, S. W.; Tucker, G. E.; Kean, J. W.; Coe, J. A. — Tue, 14 May 2013 00:00 -0500

It has been proposed that debris flows cut bedrock valleys in steeplands worldwide, but field measurements needed to constrain mechanistic models of this process remain sparse due to the difficulty of instrumenting natural flows. Here we present and analyze measurements made using an automated sensor network, erosion bolts, and a 15.24 cm by 15.24 cm force plate installed in the bedrock channel floor of a steep catchment. These measurements allow us to quantify the distribution of basal forces from natural debris‒flow events that incised bedrock. Over the 4 year monitoring period, 11 debris‒flow events scoured the bedrock channel floor. No clear water flows were observed. Measurements of erosion bolts at the beginning and end of the study indicated that the bedrock channel floor was lowered by 36 to 64 mm. The basal force during these erosive debris‒flow events had a large‒magnitude (up to 21 kN, which was approximately 50 times larger than the concurrent time‒averaged mean force), high‒frequency (greater than 1 Hz) fluctuating component. We interpret these fluctuations as flow particles impacting the bed. The resulting variability in force magnitude increased linearly with the time‒averaged mean basal force. Probability density functions of basal normal forces were consistent with a generalized Pareto distribution, rather than the exponential distribution that is commonly found in experimental and simulated monodispersed granular flows and which has a lower probability of large forces. When the bed sediment thickness covering the force plate was greater than ∼ 20 times the median bed sediment grain size, no significant fluctuations about the time‒averaged mean force were measured, indicating that a thin layer of sediment (∼ 5 cm in the monitored cases) can effectively shield the subjacent bed from erosive impacts. Coarse‒grained granular surges and water‒rich, intersurge flow had very similar basal force distributions despite differences in appearance and bulk‒flow density. These results demonstrate that debris flows can have strong control on rates of steepland evolution and contribute to a foundation needed for modeling debris‒flow incision stochastically.

Fall diel diet composition of American eel (Anguilla rostrata) in a tributary of the Hudson River, New York, USA

Tue, 14 May 2013 00:00 -0500

American eel (Anguilla rostrata), a once common species, is now in decline throughout much of its native range in North America. There is little information on the role of American eel in river food webs. A better understanding of the diet and ecological role of American eel will help in the conservation of this important species. During autumn 2009, eel and aquatic invertebrate samples were collected from Hannacroix Creek, a tributary of the Hudson River, in Albany and Greene counties, New York, USA. Eel diet was analyzed by the eel size and time period (day or night). A high proportion of eel stomachs were empty (73%). Eel diets varied among size classes and day and night feeding periods (p = 0.001). Diet overlap was significant between small and medium eels caught both during the day (α = 0.71) and at night (α = 0.84). Nocturnal diet and nocturnal invertebrate samples were similar (α = 0.65), indicating a preference for bottom feeding during the night. Mayfly nymphs were the major prey consumed in each period by all size classes. Among eels that fed, night-feeding eels had the greatest stomach weight (as a percent of total body weight). The swim-bladder parasite, Anguillicoloides crassus, was also observed in eels of all size classes with nearly 50% afflicted.

Fat or lean: adjustment of endogenous energy stores to predictable and unpredictable changes in allostatic load

Schultner, Jannik ; Kitaysky, Alexander S.; Welcker, Jorg ; Hatch, Scott — Tue, 14 May 2013 00:00 -0500

1. The ability to store energy endogenously is an important ecological mechanism that allows animals to buffer predictable and unpredictable variation in allostatic load. The secretion of glucocorticoids, which reflects changes in allostatic load, is suggested to play a major role in the adjustment of endogenous stores to these varying conditions. 2. Although crucially important, the relationship between allostatic load and energy stores remains largely unexplored. Two contrasting hypotheses describe how stores may be adjusted: animals may use low allostatic loads to increase stores to a maximum possible (‘fat and fit’), or they can attain a lean physique due to fitness advantages of a low body mass (‘lean and fit’). 3. We compiled observational and experimental data available for a long-lived seabird to examine the relationship between glucocorticoids and stored energy at two life history stages (incubation and chick-rearing). Data were collected across multiple years and colonies in the North Pacific, thereby reflecting the wide range of environmental conditions birds' encounter in the marine environment. During experimental manipulations, allostatic load was minimized by supplementing food to free-living birds. 4. We found that the relationship between allostatic load and energy stores was clearly curvilinear at both life history stages. Observational data suggested that energy stores remained relatively stable under low allostatic load and decreased under high loads. Experimental data showed that birds did not maximize energy stores under favourable conditions but maintained energy stores below a physiologically attainable level. 5. Energy stores remained consistently lower during chick-rearing compared to incubation across the wide range of variations in allostatic load suggesting that stage-specific trade-offs limit the accumulation of energy during favourable environmental conditions. Secretion of glucocorticoids did not appear to mediate this shift in energy stores between the life history stages. 6. Overall, results of this study support the ‘lean and fit’ hypothesis. We conclude that increased energy stores may not necessarily reflect better environmental conditions experienced by individuals or predict their higher fitness. A major advantage of adopting a lean physique when environmental conditions allow may be the avoidance of additional energetic costs for moving a heavy body. In breeding seabirds, this advantage may be more important during chick-rearing. In the focal species, the secretion of glucocorticoids might be involved in regulation of energy stores within a life history stage but does not appear to mediate an adaptive shift in energy stores between the incubating and chick-rearing stages of reproduction.

Evaluation of a new model of aeolian transport in the presence of vegetation

Tue, 14 May 2013 00:00 -0500

Aeolian transport is an important characteristic of many arid and semiarid regions worldwide that affects dust emission and ecosystem processes. The purpose of this paper is to evaluate a recent model of aeolian transport in the presence of vegetation. This approach differs from previous models by accounting for how vegetation affects the distribution of shear velocity on the surface rather than merely calculating the average effect of vegetation on surface shear velocity or simply using empirical relationships. Vegetation, soil, and meteorological data at 65 field sites with measurements of horizontal aeolian flux were collected from the Western United States. Measured fluxes were tested against modeled values to evaluate model performance, to obtain a set of optimum model parameters, and to estimate the uncertainty in these parameters. The same field data were used to model horizontal aeolian flux using three other schemes. Our results show that the model can predict horizontal aeolian flux with an approximate relative error of 2.1 and that further empirical corrections can reduce the approximate relative error to 1.0. The level of error is within what would be expected given uncertainties in threshold shear velocity and wind speed at our sites. The model outperforms the alternative schemes both in terms of approximate relative error and the number of sites at which threshold shear velocity was exceeded. These results lend support to an understanding of the physics of aeolian transport in which (1) vegetation's impact on transport is dependent upon the distribution of vegetation rather than merely its average lateral cover and (2) vegetation impacts surface shear stress locally by depressing it in the immediate lee of plants rather than by changing the bulk surface's threshold shear velocity. Our results also suggest that threshold shear velocity is exceeded more than might be estimated by single measurements of threshold shear stress and roughness length commonly associated with vegetated surfaces, highlighting the variation of threshold shear velocity with space and time in real landscapes.

Newly documented host fishes for the eastern elliptio mussel (Elliptio complanata)

Heather S Galbraith — Tue, 14 May 2013 00:00 -0500

The eastern elliptio (Elliptio complanata) is a common, abundant and ecologically important freshwater mussel that occurs throughout the Atlantic Slope drainage in the United States and Canada. Previous research has shown E. complanata glochidia to be host fish generalists, parasitizing yellow perch (Perca flavescens), banded killifish (Fundulus diaphanus), banded sculpin (Cottus carolinae), and seven centrarchid species. Past laboratory studies have been conducted in the Midwest and glochidia sources typically included lakes the Great Lakes basin or were unreported. The objective of this study was to identify host fishes for E. complanata from streams in the Mid-Atlantic region. We used artificial laboratory infections to test host suitability of 38 fish and two amphibian species with E. complanata glochidia from the Chesapeake Bay drainage. Glochidia successfully metamorphosed into juvenile mussels on five fish species: American eel (Anguilla rostrata), brook trout (Salvelinus fontinalis), lake trout (S. namaycush), mottled sculpin (C. bairdii), and slimy sculpin (C. cognatus). American eel was the most effective host, yielding the highest overall metamorphosis success (percentage of attached glochidia that transformed into juvenile mussels;{greater than or equal to}0.90) and producing 13.2 juveniles per fish overall. No juvenile E. complanata metamorphosed on other fish species tested, including many previously identified host fishes reported in the literature. Reasons for discrepancies in published host fish could include geographic variation in host use across the species' range, differences in host use between lentic and lotic populations, or poorly resolved taxonomy within the genus Elliptio.

Regional patterns and proximal causes of the recent snowpack decline in the Rocky Mountains, U.S.

Pederson, Gregory T.; Betancourt, Julio L.; McCabe, Gregory J. — Tue, 14 May 2013 00:00 -0500

We used a first-order, monthly snow model and observations to disentangle seasonal influences on 20th century,regional snowpack anomalies in the Rocky Mountains of western North America, where interannual variations in cool-season (November–March) temperatures are broadly synchronous, but precipitation is typically antiphased north to south and uncorrelated with temperature. Over the previous eight centuries, regional snowpack variability exhibits strong, decadally persistent north-south (N-S) antiphasing of snowpack anomalies. Contrary to the normal regional antiphasing, two intervals of spatially synchronized snow deficits were identified. Snow deficits shown during the 1930s were synchronized north-south by low cool-season precipitation, with spring warming (February–March) since the 1980s driving the majority of the recent synchronous snow declines, especially across the low to middle elevations. Spring warming strongly influenced low snowpacks in the north after 1958, but not in the south until after 1980. The post-1980, synchronous snow decline reduced snow cover at low to middle elevations by ~20% and partly explains earlier and reduced streamflow and both longer and more active fire seasons. Climatologies of Rocky Mountain snowpack are shown to be seasonally and regionally complex, with Pacific decadal variability positively reinforcing the anthropogenic warming trend.

Optimizing stream water mercury sampling for calculation of fish bioaccumulation factors

Tue, 14 May 2013 00:00 -0500

Mercury (Hg) bioaccumulation factors (BAFs) for game fishes are widely employed for monitoring, assessment, and regulatory purposes. Mercury BAFs are calculated as the fish Hg concentration (Hg_fish) divided by the water Hg concentration (Hg_water) and, consequently, are sensitive to sampling and analysis artifacts for fish and water. We evaluated the influence of water sample timing, filtration, and mercury species on the modeled relation between game fish and water mercury concentrations across 11 streams and rivers in five states in order to identify optimum Hg_water sampling approaches. Each model included fish trophic position, to account for a wide range of species collected among sites, and flow-weighted Hg_water estimates. Models were evaluated for parsimony, using Akaike’s Information Criterion. Better models included filtered water methylmercury (FMeHg) or unfiltered water methylmercury (UMeHg), whereas filtered total mercury did not meet parsimony requirements. Models including mean annual FMeHg were superior to those with mean FMeHg calculated over shorter time periods throughout the year. FMeHg models including metrics of high concentrations (80th percentile and above) observed during the year performed better, in general. These higher concentrations occurred most often during the growing season at all sites. Streamflow was significantly related to the probability of achieving higher concentrations during the growing season at six sites, but the direction of influence varied among sites. These findings indicate that streamwater Hg collection can be optimized by evaluating site-specific FMeHg - UMeHg relations, intra-annual temporal variation in their concentrations, and streamflow-Hg dynamics.

Return period adjustment for runoff coefficients based on analysis in undeveloped Texas watersheds

Tue, 14 May 2013 00:00 -0500

The rational method for peak discharge (Q_p) estimation was introduced in the 1880s. The runoff coefficient (C) is a key parameter for the rational method that has an implicit meaning of rate proportionality, and the C has been declared a function of the annual return period by various researchers. Rate-based runoff coefficients as a function of the return period, C(T), were determined for 36 undeveloped watersheds in Texas using peak discharge frequency from previously published regional regression equations and rainfall intensity frequency for return periods T of 2, 5, 10, 25, 50, and 100 years. The C(T) values and return period adjustments C(T)/C(T=10 year) determined in this study are most applicable to undeveloped watersheds. The return period adjustments determined for the Texas watersheds in this study and those extracted from prior studies of non-Texas data exceed values from well-known literature such as design manuals and textbooks. Most importantly, the return period adjustments exceed values currently recognized in Texas Department of Transportation design guidance when T>10 years.

Integrated synoptic surveys using an autonomous underwater vehicle and manned boats

Jackson, P. Ryan — Tue, 14 May 2013 00:00 -0500

Traditional surface-water surveys are being combined with autonomous technology to produce integrated surveys of bathymetry, water quality, and velocity in inland lakes and reservoirs. This new technology provides valuable, high-resolution, integrated data that allow a systems-based approach to understanding common environmental problems. This fact sheet presents several example applications of integrated surveys within inland lakes and coastal Lake Michigan and Lake Erie.

Capture of white sturgeon larvae downstream of The Dalles Dam, Columbia River, Oregon and Washington, 2012

Parsley, Michael J.; Kofoot, Eric — Tue, 14 May 2013 00:00 -0500

Wild-spawned white sturgeon (Acipenser transmontanus) larvae captured and reared in aquaculture facilities and subsequently released, are increasingly being used in sturgeon restoration programs in the Columbia River Basin. A reconnaissance study was conducted to determine where to deploy nets to capture white sturgeon larvae downstream of a known white sturgeon spawning area. As a result of the study, 103 white sturgeon larvae and 5 newly hatched free-swimming embryos were captured at 3 of 5 reconnaissance netting sites. The netting, conducted downstream of The Dalles Dam on the Columbia River during June 25–29, 2012, provided information for potentially implementing full-scale collection efforts of large numbers of larvae for rearing in aquaculture facilities and for subsequent release at a larger size in white sturgeon restoration programs.