The Gulf of the Farallones is located on a continental margin that is tectonically active and has experienced eustatic fluctuations of sea level throughout the Quaternary. Bathymetry of the Gulf suggests that it is different from the average continental shelf off California in that instead of a seafloor that slopes gently seaward from the shoreline to the shelf edge (dominantly west to southwest), much of the Gulf shelf slopes to the northwest, a direction that is subparallel to that of the adjacent mainland shoreline. Isobaths are oblique to shore-normal for much of the Gulf shelf as opposed to the more typical shore-parallel isobaths. This northwest trend is parallel to that of the offshore granitic outcrops, the Farallon Island ridge and Cordell Bank. 3.5 kHz shallow subsurface profiles show a regional unconformity (basal unconformity of this study) that truncates bedrock and typically is overlain by a very thin veneer (1-2 m or less) of acoustically transparent unconsolidated sediment. In places, the basal unconformity appears to be coincident with the seafloor. Where the basal unconformity is within 1-2 m of the seafloor, side-scan sonar reveals that either bedrock pierces the seafloor or numerous linear depressions dissect the shelf seafloor. Side-scan sonar shows that the central part of the study area is characterized by numerous linear depressions that are on the order of 1-3 m deep, several meters to 5 km in length, and from 250 m to 2 km in width. The only Holocene unconsolidated sediment in excess of 1-2 m that has accumulated on the Gulf shelf is located where the bedrock surface is topographically depressed. The topographic lows are situated south of the Point Reyes headland and southwest of the Golden Gate. The sediment deposits that overlie these lows attain thicknesses up to 15-20 m; however, their average thickness is less than 10 m. Structure contours on the basal unconformity surface, essentially the top of the bedrock platform, also show that it is topographically high at its southern end and low at its northern end; the slope of the platform is therefore to the northwest. The seafloor mimics the attitude of the bedrock platform owing to the lack of appreciable sediment cover and hence also slopes northwest. This accounts for the oblique to shore-normal orientation of isobaths in the Gulf and the northwestward slope of the seafloor. The results of this investigation suggest that eustatic sea level fluctuations in conjunction with local tectonics had a profound effect on the deposition, erosion, and preservation of sediment on the Gulf shelf throughout the Quaternary and that the shallow subsurface greatly influences many aspects of the present surficial morphology.