The ability of planktivorous fishes to exert top-down control on Bythotrephes potentially has far-reaching impacts on aquatic food-webs, given previously described effects of Bythotrephes on zooplankton communities. We estimated consumption of Bythotrephes by planktivorous and benthivorous fishes, using bioenergetics and daily ration models at nearshore (18 m), intermediate (46 m), and offshore (110 m) depths along one western Lake Superior transect (April, and September-November) and two northern Lake Michigan transects (April, July, September). In Lake Superior, consumption (primarily by cisco Coregonus artedi) exceeded Bythotrephes production at all offshore sites in September-November (up to 396% of production consumed) and at the intermediate site in November (842%) with no evidence of consumption nearshore. By comparing Bythotrephes biomass following months of excessive consumption, we conservatively concluded that top-down control was evident only at the offshore site during September-October. In Lake Michigan, consumption by fishes (primarily alewife Alosa pseudoharengus) exceeded production at nearshore sites (up to 178%), but not in deeper sites (< 15%). Evidence for top-down control in the nearshore was not supported, however, as Bythotrephes never subsequently declined. Using generalized additive models, temperature, and not fish consumption, not zooplankton prey density, best explained variability in Bythotrephes biomass. The non-linear pattern revealed Bythotrephes to increase with temperature up to 16 °C, and then decline between 16 and 23 °C. We discuss how temperature likely has direct negative impacts on Bythotrephes when temperatures near 23 °C, but speculate that predation also contributes to declining biomass when temperatures exceed 16 °C.