We have been conducting detailed studies of the biology of seabirds in relation to oceanography and forage fish ecology in lower Cook Inlet, Alaska, since 1995. This fortuitously allowed us to document biological effects of the 1997/98 ENSO in this region. Anomalously warm sea surface temperatures (SSTs) were observed in the Gulf of Alaska (GOA) beginning in June of 1997, but not in Cook Inlet until September, 1997. Warm temperature anomalies at the surface and at depth persisted until May of 1998, when temperatures returned to average in the GOA and Cook Inlet. Thus, temperature anomalies occurred outside the core window of productivity (June–August) for forage fish and seabirds in both 1997 and 1998. Abundance or production of phytoplankton, zooplankton, fish, and seabirds in lower Cook Inlet varied among years, and overall appeared to be depressed in 1998. We observed a few biological anomalies that might be attributed to ENSO effects: (1) a significant die-off of Common Murres occurred in March–May of 1998, (2) murres and Black-legged Kittiwakes were physiologically stressed during the 1998 breeding season, (3) murres failed to reproduce at one colony in 1998, (4) kittiwake breeding success was lower than usual at colonies in 1998, and (5) phenology of breeding was later in 1998 for both murres and kittiwakes. We presume that seabird die-offs, reduced productivity and delayed phenology were linked to a reduction or delay in food availability, but the mechanism by which anomalously warm water temperatures in winter reduce forage fish availability during the summer breeding season for seabirds is not known.