A transcriptome resource for the Arctic Cod (Boreogadus saida)

Marine Genomics
By: , and 

Links

Abstract

Arctic Cod (Boreogadus saida) serve as an important link in Arctic food webs and are thus considered an important species for environmental monitoring. RNA-Seq was conducted on samples from wild-collected individuals representing various age classes and tissue types to obtain as complete a transcriptome as possible on an Illumina MiSeq, which resulted in a total of 64,457 transcripts with an average length of 295 bp. We identified well-known genes that are associated with temperature change or response to pollutants. This RNA-Seq effort provides the first insight into the B. saida transcriptome, which can be a starting point for investigations identifying genes for local adaptation and genomic responses to future environmental change.

Additional publication details

Publication type Article
Publication Subtype Journal Article
Title A transcriptome resource for the Arctic Cod (Boreogadus saida)
Series title Marine Genomics
DOI 10.1016/j.margen.2018.03.003
Volume 41
Year Published 2018
Language English
Publisher Elsevier
Contributing office(s) Alaska Science Center Biology WTEB
Description 4 p.
First page 57
Last page 61