A multi-component geochemical dataset was collected from groundwater and surface-water bodies associated with the urban Fountain Creek alluvial aquifer, Colorado, USA, to facilitate analysis of recharge sources, geochemical interactions, and groundwater-residence times. Results indicate that groundwater can be separated into three distinct geochemical zones based on location within the flow system and proximity to surface water, and these zones can be used to infer sources of recharge and groundwater movement through the aquifer. Rare-earth-element concentrations and detections of wastewater-indicator compounds indicate the presence of effluent from wastewater-treatment plants in both groundwater and surface water. Effluent presence in groundwater indicates that streams in the area lose to groundwater in some seasons and are a source of focused groundwater recharge. Distributions of pharmaceuticals and wastewater-indicator compounds also inform an understanding of groundwater–surface-water interactions. Noble-gas isotopes corroborate rare-earth-element data in indicating geochemical evolution within the aquifer from recharge area to discharge area and qualitatively indicate variable groundwater-residence times and mixing with pre-modern groundwater. Quantitative groundwater-residence times calculated from ³H/³He, SF₆, and lumped-parameter modeling generally are less than 20 years, but the presence of mixing with older groundwater of an unknown age is also indicated at selected locations. Future investigations would benefit by including groundwater-age tracers suited to quantification of mixing for both young (years to decades) and old (centuries and millennia) groundwater. This multi-faceted analysis facilitated development of a conceptual model for the investigated groundwater-flow system and illustrates the application of an encompassing suite of analytes in exploring hydrologic and geochemical interactions in complex systems.