The White Sands pupfish (Cyprinodon tularosa), listed as threatened by the State of New Mexico and as a Federal species of concern, is endemic to the Tularosa Basin, New Mexico. Because water quality can affect pupfish and the environmental conditions of their habitat, a comprehensive compilation of hydrologic data for pupfish habitat and nonhabitat areas in the northern Tularosa Basin was undertaken by the U.S. Geological Survey in cooperation with White Sands Missile Range.

The four locations within the Tularosa Basin that are known pupfish habitat areas are the Salt Creek, Malpais Spring and Malpais Salt Marsh, Main Mound Spring, and Lost River habitat areas. Streamflow data from the Salt Creek near Tularosa streamflow-gaging station indicated that the average annual mean streamflow and average annual total streamflow for water years 1995–2008 were 1.35 cubic feet per second (ft³/s) and 983 acre-feet, respectively. Periods of no flow were observed in water years 2002 through 2006. Dissolved-solids concentrations in Salt Creek samples collected from 1911 through 2007 ranged from 2,290 to 66,700 milligrams per liter (mg/L).

The average annual mean streamflow and average annual total streamflow at the Malpais Spring near Oscura streamflow-gaging station for water years 2003–8 were 6.81 ft³/s and 584 acre-feet, respectively. Dissolved-solids concentrations for 16 Malpais Spring samples ranged from 3,882 to 5,500 mg/L. Isotopic data for a Malpais Spring near Oscura water sample collected in 1982 indicated that the water was more than 27,900 years old.

Streamflow from Main Mound Spring was estimated at 0.007 ft³/s in 1955 and 1957 and ranged from 0.02 to 0.07 ft³/s from 1996 to 2001. Dissolved-solids concentrations in samples collected between 1955 and 2007 ranged from an estimated 3,760 to 4,240 mg/L in the upper pond and 4,840 to 5,120 mg/L in the lower pond. Isotopic data for a Main Mound Spring water sample collected in 1982 indicated that the water was about 19,600 years old.

Dissolved-solids concentrations of Lost River samples collected from 1984 to 1999 ranged from 8,930 to 118,000 (estimated) mg/L.

Dissolved-solids concentrations in samples from nonhabitat area sites ranged from 1,740 to 54,200 (estimated) mg/L. In general, water collected from pupfish nonhabitat area sites tends to have larger proportions of calcium, magnesium, and sulfate than water from pupfish habitat area sites. Water from springs associated with mounds in pupfish nonhabitat areas was of a similar type (calcium-sulfate) to water associated with mounds in pupfish habitat areas. Alkali Spring had a sodium-chloride water type, but the proportions of sodium-chloride and magnesium-sulfate are unique as compared to samples from other sites.