Continuous Stream Discharge, Salinity, and Associated Data Collected in the Lower St. Johns River and Its Tributaries, Florida, 2020

Open-File Report 2022-1024
Prepared in cooperation with the U.S. Army Corps of Engineers
By:

Links

Acknowledgments

The author thanks the data collection personnel from the U.S. Geological Survey for their help collecting and analyzing the streamflow and water-quality data.

Abstract

The U.S. Army Corps of Engineers, Jacksonville District, is deepening the St. Johns River channel in Jacksonville, Florida, from 40 to 47 feet along 13 miles of the river channel beginning at the mouth of the river at the Atlantic Ocean, in order to accommodate larger, fully loaded cargo vessels. The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, monitored stage, discharge, and (or) water temperature and salinity at 26 continuous data collection stations in the St. Johns River and its tributaries.

This is the fifth annual report by the U.S. Geological Survey on data collection for the Jacksonville Harbor deepening project. The report contains information pertinent to data collection during the 2020 water year, from October 2019 to September 2020. The addition of water-quality data collection at St. Johns River at Buffalo Bluff near Satsuma was the only modification to the previously installed network.

Discharge and salinity varied widely during the data collection period, which included above-average rainfall for 3 of the 5 counties in the study area. Total annual rainfall for all counties ranked third among the annual totals computed for the 5 years considered for this study. Annual mean discharge at Clapboard Creek was highest among the tributaries, followed by Ortega River, Durbin Creek, Pottsburg Creek at U.S. 90, Cedar River, Trout River, Julington Creek, Pottsburg Creek near South Jacksonville, Dunn Creek, and Broward River, whose annual mean was lowest. Annual mean discharge at 8 of the 10 tributary monitoring sites was higher for the 2020 water year than for the 2019 water year, and the computed annual mean flow at Clapboard Creek was the highest over the 5 years considered for this study. The annual mean discharge for each of the main-stem sites was higher for the 2020 water year than for the 2019 water year except for Buffalo Bluff, which remained the same.

Among the tributary sites, annual mean salinity was highest at Clapboard Creek, the site closest to the Atlantic Ocean, and was lowest at Durbin Creek, the site farthest from the ocean. Annual mean salinity data from the main-stem sites on the St. Johns River indicate that salinity decreased with distance upstream from the ocean, which was expected. Relative to annual mean salinity calculated for the 2019 water year, annual mean salinity at all monitoring locations was higher for the 2020 water year except at the tributary sites of Trout River, Dunn Creek, and Clapboard Creek, which were lower, and Durbin Creek, which remained the same. The 2020 annual mean salinity on the main-stem of the St. Johns River was the highest since the beginning of the study in 2016 at Dancy Point, Racy Point, Shands Bridge, below Shands Bridge, above Buckman Bridge, and Jacksonville (Acosta Bridge). Among the tributary sites, annual mean salinity rankings for 2020 were highest for Julington Creek and Ortega River, which were the second-highest on record for those sites.

Introduction

The St. Johns River flows 310 miles (mi) northward through the eastern half of Florida, through Jacksonville, and into the Atlantic Ocean (fig. 1). The river consists of lakes, marshes, and seagrass beds, as well as the main river channel (herein referred to as the “main stem”) that, near its mouth, can accommodate cruise ships and cargo vessels with access to the Atlantic Ocean. Jacksonville Harbor is located along the first 20 river miles, beginning at the mouth of the St. Johns River where it empties into the Atlantic Ocean. Jacksonville Harbor currently can only accommodate small cargo vessels or large cargo vessels loaded below maximum capacity because of the authorized channel depth of 40 feet (ft). Dredging an additional 7 ft will allow the port to accommodate larger, fully loaded vessels. Beginning at the mouth, the U.S. Army Corps of Engineers (USACE) plans to deepen the first 13 river miles (USACE, 2014). Dredging construction began February 2018 (Jacksonville Port Authority [JAXPORT], 2018).

Figure 1. Map showing data collection sites on the St. Johns River and its tributaries
                     with a concentration of sites in Duval County.
Figure 1.

U.S. Geological Survey data collection sites on the St. Johns River and its tributaries. Map image is the intellectual property of Esri and is used herein under license. Copyright 2021 Esri and its licensors. All rights reserved.

Salinity models indicate that the harbor deepening may alter salinity in part of the study area, potentially causing (1) salinity stress in some wetlands and submerged aquatic vegetation and (2) changes in some fish and macroinvertebrate distributions (USACE, 2014). Surface-water monitoring, required by permit, includes the collection of water temperature, salinity, and (or) stage, velocity, and streamflow data for at least 6 months prior to dredging, continuously throughout dredging, and for 10 years following dredging (Florida Department of Environmental Protection, 2016). The U.S. Geological Survey (USGS), in cooperation with the USACE, is responsible for monitoring all parameters at the gage locations listed in the permit that were not already being monitored by other entities as of January 2016, the beginning of the initial data collection period (Florida Department of Environmental Protection, 2016). The streamflow and water-quality monitoring network was used to collect baseline data in the St. Johns River and its tributaries prior to dredging and can be used to discern changes, if any, during and after dredging.

This report provides an overview of the data collected from 26 surface-water discharge and water-quality sites along the St. Johns River and its tributaries (1) under predredging conditions and (2) during the third year of dredging and fifth year of the study, specifically from October 2019 to September 2020 (figs. 1 and 2). The report documents the data collection sites, methods used to compute discharge and salinity, and parameters monitored at each site. The first 4 years of the study are described in Ryan (2018, 2019, 2020a, b).

The data collected during this study are available from the USGS National Water Information System database (USGS, 2021).

Figure 2. Map showing fairly evenly distributed data collection sites near the St.
                     Johns River in Clay, Duval, and St. Johns Counties.
Figure 2.

U.S. Geological Survey data collection sites in Clay, Duval, and St. Johns Counties, Florida. Map image is the intellectual property of Esri and is used herein under license. Copyright 2019 Esri and its licensors. All rights reserved.

Methods

The methods of data collection and processing, as well as the sites used for data collection, are described in the following sections. The descriptions of data collection sites are separated into those along the St. Johns River and those along its tributaries (table 1).

Table 1.    

U.S. Geological Survey data collection sites on the main stem of the St. Johns River and its tributaries and parameters published during the 2020 water year.

[USGS, U.S. Geological Survey; x, parameter measured; --, parameter not measured; NA, not applicable]

Map
number
USGS site number USGS site name Discharge Gage
height
Velocity Temper-ature Specific
conduc-
tance
Salinity River
mile
St. Johns River
1 302309081333001 St Johns River Dames Point Bridge at Jacksonville, Fla. -- x x x x x 10
2 02246500 St. Johns River at Jacksonville, Fla. x x x x x x 23
3 301817081393600 St. Johns River below Marco Lake at Jacksonville, Fla. -- -- -- x x x 25
4 301510081383500 St. Johns River at Christopher Point near Jacksonville, Fla. -- -- -- x x x 29
5 301124081395901 St. Johns River Buckman Bridge at Jacksonville, Fla. -- x -- x x x 34
6 301057081414800 St. Johns River above Buckman Bridge at Jacksonville, Fla. -- -- -- x x x 35
7 02245340 St. Johns River below Shands Bridge near Green Cove Springs, Fla. -- x -- x x x 49
8 295856081372301 St. Johns River Shands Bridge near Green Cove Springs, Fla. -- -- -- x x x 50
9 02245290 St. Johns River at Racy Point near Hastings, Fla. -- x -- x x x 64
10 294213081345300 St. Johns River at Dancy Point near Spuds, Fla. -- -- -- x x x 71
11 02244040 St. Johns River at Buffalo Bluff near Satsuma, Fla. x x -- x x x 90
12 02236125 St. Johns River at Astor, Fla. x x -- -- -- -- 127
Tributaries
13 02246825 Clapboard Creek near Jacksonville, Fla. x x -- -- -- -- NA
14 302657081312400 Clapboard Creek above Buckhorn Bluff near Jacksonville, Fla. -- -- -- x x x NA
15 02246804 Dunn Creek at Dunn Creek Road near Eastport, Fla. x x -- x x x NA
16 02246751 Broward River below Biscayne Boulevard near Jacksonville, Fla. x x -- x x x NA
17 302609081453300 Trout River below U.S. 1 at Dinsmore, Fla. -- -- -- x x x NA
18 02246621 Trout River near Jacksonville, Fla. x x -- -- -- -- NA
19 02246518 Pottsburg Creek at U.S. 90 near South Jacksonville, Fla. x x -- x x x NA
20 02246515 Pottsburg Creek near South Jacksonville, Fla. x x -- -- -- -- NA
21 02246459 Cedar River at San Juan Avenue at Jacksonville, Fla. x x -- x x x NA
22 301204081434900 Ortega River Salinity at Jacksonville, Fla. -- -- -- x x x NA
23 02246318 Ortega River at Kirwin Road near Jacksonville, Fla. x x -- -- -- -- NA
24 300803081354500 Julington Creek at Hood Landing near Bayard, Fla. -- -- -- x x x NA
25 02246160 Julington Creek at Old St August Road near Bayard, Fla. x x -- -- -- -- NA
26 022462002 Durbin Creek near Fruit Cove, Fla. x x -- x x x NA
Table 1.    U.S. Geological Survey data collection sites on the main stem of the St. Johns River and its tributaries and parameters published during the 2020 water year.

Methods of Data Collection and Processing

Stage data (gage height, in feet, referenced to the North American Vertical Datum of 1988) were collected at 15-minute intervals using various types of equipment, depending on location requirements, in accordance with USGS standards (Sauer and Turnipseed, 2010a). Discharge was routinely measured by using various types of equipment, depending on depth, velocity, and environmental conditions, in accordance with USGS standards (Sauer and Turnipseed, 2010b). Because of tidal and (or) wind effects, discharge was computed, in cubic feet per second, using the index-velocity method at most sites, in accordance with USGS techniques and methods (Levesque and Oberg, 2012). Discharge was computed using a stage-discharge relation at a few sites where tidal influence was not substantial (Rantz and others, 1982). Where applicable, discharge data were filtered by using the Godin low-pass filter to remove principal tidal frequencies from unit values (Godin, 1972). By convention, the USGS designates ebb (seaward) flow as positive flow and flood (landward) flow as negative flow. The residuals are not total freshwater flows, but instead, a combination of seaward freshwater flows from the watershed and landward saltwater flows from the marine environment, along with storm surges from hurricanes or tropical storms.

Water temperature, in degrees Celsius, and specific conductance, in microsiemens per centimeter at 25 degrees Celsius, were measured at intervals of 1 hour or less in accordance with USGS techniques and methods (Wagner and others, 2006). Water-quality meters were installed in situ at sites in freshwater environments. A pump and intake system was installed at sites in harsh saltwater environments to reduce fouling. This setup consisted of a meter housed inside a polyvinyl chloride chamber in a shelter. In this case, water was pumped into the chamber for 1–2 minutes before each measurement and drained from the chamber between measurements. The recording interval was reduced to one measurement per hour because of the power requirements for the pump setup. Because the chamber drains between measurements, water-quality parameters can be measured at multiple levels with one meter, if necessary. A rating table was used to convert specific conductance, in microsiemens per centimeter, to salinity, in parts per thousand (Wagner and others, 2006). Salinity was calculated for every site where water temperature and specific conductance were measured.

Missing discharge data can usually be attributed to equipment malfunction, either with the stage sensor or velocity meter (if the index-velocity method is used). For tidally filtered discharge calculation, the Godin low-pass filter requires 35 hours of continuous data before and after each data point (Godin, 1972). A data gap greater than 2 hours, therefore, results in a data gap of 3 days in the tidally filtered discharge record. For sites that include a pump setup, missing water-quality data are usually a consequence of power or pump failure, which prevents water from filling the chamber where the meter is housed. Biological fouling is a more common problem with meters installed in situ, where algal growth and crustaceans can affect the conductance measurement port or the temperature probe, both of which provide data used to calculate salinity. In either case, the affected values are not used, creating gaps in the final record.

Rainfall data for Duval, Clay, St. Johns, Putnam, and Volusia Counties in 2020 were obtained from the St. Johns River Water Management District (SJRWMD), which provides details about how average monthly rainfall data are compiled for counties in their district (SJRWMD, 2021). The period of record rainfall data to determine a long-term countywide average was compiled using National Oceanic and Atmospheric Administration (NOAA) rain gages in central and north Florida through 2009. Jacksonville Harbor and all monitoring sites included in this study are located within Duval County, except the St. Johns River sites at Astor in Volusia County, Dancy Point and Buffalo Bluff in Putnam County, Racy Point and Shands Bridge in St. Johns County, and above Buckman Bridge near the left bank in Clay County (fig. 1; table 1).

Quantile plots were created to show percentiles for annual discharge data collected at monitoring sites that have at least 10 years of record and a full contemporary year of data. The quantile plots group the annual peak discharges by water year. For this report, the 2020 water year includes data from October 1, 2019, to September 30, 2020. The resulting plots show how the 2020 water year discharge at a given station compares with that of previous water years. For discharges affected by tidal fluctuations, annual mean tidally filtered discharge was used to construct the plot.

Boxplots were created to provide a visual reference of median, interquartile range, and other useful statistics. These boxplots were constructed using all approved unit values of salinity and show salinity differences between water years.

Description of St. Johns River Main-Stem Sites

All sites on the main stem of the St. Johns River have substantive tidal influence, and therefore, the calculated discharge is tidally filtered. Only one change, the addition of salinity calculation at St. Johns River at Buffalo Bluff near Satsuma, was made to the monitoring network during this year of the study.

The farthest upstream discharge monitoring site on the St. Johns River is in Astor, Fla., at the State Road 40 Bridge (table 1; river mile 127). Approximately 37 mi downstream, discharge is also calculated for the St. Johns River at Buffalo Bluff (river mile 90). Tidally filtered discharge values have been computed since 1994 at both Astor and Buffalo Bluff. Water temperature and specific conductance are also measured at Buffalo Bluff at an approximate depth of 6 ft below the average high tide level. These parameters have been measured since the 2017 water year, so salinity was calculated using that data for comparison in this study. Another water-quality monitoring station along the St. Johns River is located downstream at Dancy Point (river mile 71), where water temperature and specific conductance are measured at an approximate depth of 11.5 ft below the average high-tide level. Stage, water temperature, and specific conductance are monitored farther downstream near the right bank of the St. Johns River at Racy Point (river mile 64). The water-quality parameters are measured at an approximate depth of 2.5 ft below the average high-tide level. Water temperature and specific conductance are collected near the channel of the St. Johns River at Shands Bridge (river mile 50). This location was historically monitored from April 1995 to September 2001 at multiple depths and from April 2008 to September 2009 at the middle depth. The meter was reinstalled in May 2018 at the middle-depth location of 10 ft below the average high-tide level. Just downstream near the right bank, stage, water temperature, and specific conductance are measured at an approximate depth of 8.5 ft below the average high-tide level at the St. Johns River below Shands Bridge (river mile 49).

A monitoring station is located near the left bank of the St. Johns River just upstream from Buckman Bridge. Water temperature and specific conductance are measured at an approximate depth of 4 ft below the average high-tide level at this station, St. Johns River above Buckman Bridge (river mile 35). A monitoring station at Buckman Bridge (river mile 34) near the main channel measures stage, water temperature, and specific conductance. The water-quality parameters are measured with separate pump setups and intakes at two different depths to measure possible stratification. One water-quality meter is used in the chamber and monitors both water properties at each depth. All water-quality parameters are monitored at approximate depths of 8 ft (top) and 16 ft (bottom) below the average high-tide level. Water-quality monitoring stations at Christopher Point (river mile 29) and Marco Lake (river mile 25) measure water temperature and specific conductance at an approximate depth of 4 ft below the average high-tide level for each location. These sites are characterized by relatively shallow water having an average depth of less than 6 ft and represent river conditions in seagrass beds near the shore.

The St. Johns River at Jacksonville, Fla., data collection station, located near downtown Jacksonville at Acosta Bridge (river mile 23), is the farthest downstream gage that calculates discharge. Stage and discharge were previously monitored before the dredging study began, but water temperature and specific conductance data collection began in October 2015 at an approximate depth of 11 ft below the average high-tide level. The monitoring equipment was moved to the center of the channel in April 2018 because of fender construction, and the intake was installed at a new depth of 17 ft below the average high-tide level. Velocity and streamflow direction data collection were added in October 2017. Tidally filtered discharge values have been computed since 1996. A monitoring station at Dames Point Bridge in Jacksonville (river mile 10) measures stage, velocity, water temperature, and specific conductance; calculation of salinity began in October 2016. All water-quality data are collected at approximate depths of 15 ft (top) and 22 ft (bottom) below the average high-tide level by using one water-quality meter and pump setup with separate intakes, similar to those used at the station at Buckman Bridge to measure possible stratification. At Dames Point, the collection of stage data began in October 2017, and the collection of velocity and streamflow direction data began in May 2018.

Description of Tributary Sites

No changes to the tributary monitoring network occurred during this year of the study. A monitoring station on Julington Creek at Old St. Augustine Road calculates discharge 6.7 mi upstream from the confluence of Julington Creek and the St. Johns River (table 1). A nearby water-quality monitoring station measures water temperature and specific conductance at an approximate depth of 3.5 ft below the average high-tide level and is located approximately 3 mi downstream from Old St. Augustine Road on Julington Creek at Hood Landing.

Durbin Creek is monitored for stage, discharge, water temperature, specific conductance, and salinity 3.5 mi upstream from the confluence with Julington Creek and 6.8 mi upstream from the confluence with the St. Johns River. The water-quality parameters are measured at an approximate depth of 3 ft below the average high-tide level. These locations are all tidally influenced, but large amounts of rainfall, resulting in increased discharge, can obscure the tidal signal.

Ortega River is monitored for stage and discharge at Argyle Forest Boulevard (Kirwin Road), 11 mi upstream from the confluence of the Ortega and St. Johns Rivers. Discharge has been computed intermittently at this location since 2002, and a stage-discharge rating was used for discharge computation during the study period, as no tidal influence is apparent in the stage data. A water-quality monitoring station that measures water temperature and specific conductance at an approximate depth of 6.5 ft below the average high-tide level is located at the bridge on Collins Road approximately 3 mi downstream from Kirwin Road at the Ortega River. Tidal influence is evident in the salinity data during times of low flow or increased stage in the St. Johns River.

The monitoring station on Cedar River measures stage, water temperature, and specific conductance at San Juan Avenue, 1.5 mi upstream from the confluence of the Cedar and St. Johns Rivers. The water-quality parameters are monitored at an approximate depth of 6 ft below the average high-tide level. Historical, tidally filtered discharge values have been computed intermittently since 2002. Wind, tide, and rainfall all substantively affect flow and salinity at Cedar River, and vertically stratified, bidirectional flow is commonly measured when strong winds occur opposite the direction of flow.

The station at Pottsburg Creek near South Jacksonville measures stage and is 7.3 mi upstream from the confluence of Pottsburg Creek and the St. Johns River. A stage-discharge rating was used for discharge computation during the study period. The data indicate tidal influence when stage is very low in the creek and elevated in the St. Johns River, but discharge measurements confirm the validity of the stage-discharge relation. Pottsburg Creek is monitored for stage, discharge, water temperature, specific conductance, and salinity at U.S. 90, 5.2 mi upstream from the confluence of Pottsburg Creek and the St. Johns River. The water-quality parameters are monitored at an approximate depth of 4 ft below the average high-tide level. This location has a more pronounced tidal signal than the upstream location on Pottsburg Creek, and discharge and salinity are affected primarily by rainfall and elevated stage in the river.

The monitoring station for Trout River calculates discharge at Lem Turner Road, 5 mi upstream from the confluence of the Trout and St. Johns Rivers. Water temperature and specific conductance are measured 9.3 mi upstream from the confluence at an approximate depth of 6 ft below the average high-tide level. Broward River is monitored for stage, discharge, water temperature, specific conductance, and salinity near Biscayne Boulevard, 6.3 mi upstream from its confluence with the St. Johns River. The water-quality parameters are monitored at an approximate depth of 4.5 ft below the average high-tide level. Discharge and salinity at these stations have a pronounced tidal signal, even when stage is elevated.

Dunn Creek is monitored for stage, discharge, water temperature, specific conductance, and salinity at Dunn Creek Road, 5.3 mi upstream from the confluence of Dunn Creek and the St. Johns River. The monitoring station for Clapboard Creek calculates discharge near Sheffield Road, 4.5 mi upstream from the confluence of Clapboard Creek and the St. Johns River. Water temperature and specific conductance are measured at a location 0.5 mi upstream. The water-quality parameters are monitored at approximate depths of 5.5 and 6.5 ft below the average high-tide level. Discharge and salinity fluctuations at these stations are dependent on rainfall in the relatively small drainage area and on wind effects from the St. Johns River, owing to the proximity of the sites to the river and Atlantic Ocean.

Results

Discharge and salinity varied widely during the 2020 water year because of the large study area and diversity of sites. As expected, salinities were lowest at the tributary sites farthest from the ocean and highest during periods of low flow in the St. Johns River. Discharge also increased at both the tributary and main-stem sites during periods of increased rainfall.

Rainfall, daily discharge, and salinity plots for the 2020 water year (October 2019–September 2020) are presented in the following sections where applicable. A year refers to a water year in these sections unless otherwise noted. Daily discharge is tidally filtered at sites where substantive tidal fluctuations occur. Salinity values are not filtered and include daily maximum, minimum, and mean values. Instantaneous values can be accessed via the USGS National Water Information System database (USGS, 2021). Annual mean discharges are calculated only for sites having at least an entire year of discharge record. The annual mean is not calculated for partial years of record when stations were installed. Quantile plots are only available for sites with a minimum of 10 years of streamflow record.

Rainfall

Duval County rainfall for the 2020 water year (October 2019–September 2020) was 5.6 inches (in.) above the long-term average (SJRWMD, 2021). Monthly total rainfall ranged from 2.5 in. below average in January to 3.8 in. above average in June (fig. 3). Duval County had the second-highest annual rainfall compared to the cumulative long-term average of the five counties included in this study (SJRWMD, 2021). Annual rainfall averaged 1.3 in. above and 3.4 in. below average for Clay and St. Johns Counties, respectively, and annual rainfall was less for both counties than for Duval County (SJRWMD, 2021). The highest monthly rainfall total for Clay County occurred in June and was 2.7 in. above average, and the highest positive monthly departure for St. Johns County, 1.9 in. above average, occurred in December. The lowest monthly rainfall totals for the two counties occurred in March and were 2.5 below average for Clay County and 3.2 in. below average for St. Johns County (figs. 4 and 5). Of the five counties compared for this study, the two northernmost counties, Duval County and Clay County, ranked second and third for rainfall totals in the 2020 water year.

Figure 3. Graph showing Duval County rainfall with highest rainfall in June and lowest
                        in January.
Figure 3.

Graph showing 2020 water year monthly rainfall and mean monthly rainfall for Duval County (St. Johns River Water Management District [SJRWMD], 2021).

Figure 4. Graph showing Clay County rainfall with below-average monthly totals from
                        January to March.
Figure 4.

Graph showing 2020 water year monthly rainfall and mean monthly rainfall for Clay County (St. Johns River Water Management District [SJRWMD], 2021).

Figure 5. Graph showing St. Johns County rainfall with below-average monthly totals
                        from January to March.
Figure 5.

Graph showing 2020 water year monthly rainfall and mean monthly rainfall for St. Johns County (St. Johns River Water Management District [SJRWMD], 2021).

Rainfall totals for Putnam County and Volusia County were 3.4 in. below and 9.1 in. above their average yearly totals, respectively (SJRWMD, 2021). Rainfall for Putnam County ranged from 2.0 in. above average in December to 2.5 in. below average in March (fig. 6). Rainfall for Volusia County ranged from 4.3 in. above average in October to 3.0 in. below average in March (fig. 7). Rainfall for each of the five counties was below the average monthly total from January to March except Duval County, which was slightly above average in February.

Figure 6. Graph showing Putnam County rainfall with below-average monthly totals from
                        January to March.
Figure 6.

Graph showing 2020 water year monthly rainfall and mean monthly rainfall for Putnam County (St. Johns River Water Management District [SJRWMD], 2021).

Figure 7. Graph showing Volusia County with most rain from July to September, with
                        October far exceeding the monthly average.
Figure 7.

Graph showing 2020 water year monthly rainfall and mean monthly rainfall for Volusia County (St. Johns River Water Management District [SJRWMD], 2021).

Main-Stem Sites

The parameters collected on the main stem of the St. Johns River are affected by many factors, including tidal influence, rainfall, and wind. Heavy rainfall typically increases discharge and decreases salinity, and the tidal influence introduces more fluctuations than a nontidal system. Strong easterly winds can increase salinity in the St. Johns River as ocean water with higher salinity is pushed upstream and can lower or even produce negative discharge for multiple days. When the wind calms or changes direction, discharge typically increases sharply as this ocean water and other tributary inflows exit the river.

St. Johns River at Astor, Florida—Daily tidally filtered discharge at Astor ranged from −3,720 to 9,800 cubic feet per second (ft3/s) during the 2020 water year, with an annual mean of 2,900 ft3/s (fig. 8). Tidally filtered discharge was estimated for 5 days in December, 12 days in June, and 5 days in September. A comparison of historical annual mean tidally filtered flows indicated that 2020 streamflow was at the 56th percentile of the 26 years of record; the median tidally filtered annual mean flow for the period of record is 2,820 ft3/s (fig. 9). The annual peak discharge occurred in September after 3 consecutive months of above-average rainfall in Volusia County (fig. 7).

Figure 8. Hydrograph showing highest daily mean tidally filtered discharge at Astor
                        in September.
Figure 8.

Daily mean tidally filtered discharge for St. Johns River at Astor, Florida.

Figure 9. Quantile plot showing slightly above average 2020 annual mean tidally filtered
                        streamflow data for St. Johns River at Astor.
Figure 9.

Annual mean tidally filtered streamflow data for St. Johns River at Astor, Florida.

St. Johns River at Buffalo Bluff near Satsuma, Florida—Daily tidally filtered discharge at Buffalo Bluff ranged from −14,900 to 18,100 ft3/s during the 2020 water year, with an annual mean of 4,780 ft3/s (fig. 10). Salinity ranged from 0.3 to 0.7 parts per thousand (ppt) over this same period, with a median and mean of 0.5 ppt (fig. 11). There were 35 days of missing salinity data from June to July and 5 days of missing discharge data in August caused by equipment malfunction. A comparison of historical annual mean tidally filtered flows indicated that 2020 streamflow was at the 65th percentile of the 27 years of record; the median tidally filtered flow for the period of record is 4,480 ft3/s (fig. 12). The lowest tidally filtered discharge for the 2020 water year occurred in late February during a period of below-average rainfall in Putnam County (fig. 6). The annual mean and median salinity are within 0.2 ppt for the 4 years salinity was calculated in the study (fig. 13).

Figure 10. Hydrograph showing highest daily mean tidally filtered discharge at Buffalo
                        Bluff near Satsuma in September.
Figure 10.

Daily mean tidally filtered discharge for St. Johns River at Buffalo Bluff near Satsuma, Florida.

Figure 11. Graph showing highest salinity at Buffalo Bluff near Satsuma from June
                        to September.
Figure 11.

Daily maximum, minimum, and mean salinity for St. Johns River at Buffalo Bluff near Satsuma, Florida.

Figure 12.  Quantile plot showing comparatively high 2020 annual mean streamflow data
                        for Buffalo Bluff near Satsuma.
Figure 12.

Annual mean tidally filtered streamflow data for St. Johns River at Buffalo Bluff near Satsuma, Florida.

Figure 13. Boxplot showing fairly consistent salinity data at Buffalo Bluff near Satsuma
                        from 2017 to 2020.
Figure 13.

Salinity data for St. Johns River at Buffalo Bluff near Satsuma, Florida.

St. Johns River at Dancy Point near Spuds, Florida—Salinity on the St. Johns River at Dancy Point ranged from 0.3 to 0.6 ppt during the 2020 water year, with a median and mean of 0.5 ppt (fig. 14). The salinity data show fluctuations caused by tidal effects and rainfall, and a gradual increase from March to May. The annual mean and median salinity are within 0.2 ppt for the 4 years salinity was calculated in the study (fig. 15).

Figure 14. Graph showing highest salinity at Dancy Point near Spuds from June to September.
Figure 14.

Daily maximum, minimum, and mean salinity for St. Johns River at Dancy Point near Spuds, Florida.

Figure 15. Boxplot showing fairly consistent salinity data at Dancy Point near Spuds
                        from 2017 to 2020.
Figure 15.

Salinity data for St. Johns River at Dancy Point near Spuds, Florida.

St. Johns River at Racy Point near Hastings, Florida—Salinity on the St. Johns River at Racy Point ranged from 0.3 to 0.6 ppt during the 2020 water year, with a median of 0.4 ppt and mean of 0.5 ppt (fig. 16). There were 4 days of missing salinity data each in April and May, 14 days in June, and 5 days in July caused by equipment malfunction. Like computed salinity at the Buffalo Bluff site, computed salinity at Racy Point gradually increased from March to May. The 2020 mean salinity was the highest by 0.1 ppt over the 3 years considered for this study (fig. 17).

Figure 16. Graph showing salinity data for Racy Point near Hastings, showing fairly
                        consistent levels.
Figure 16.

Daily maximum, minimum, and mean salinity for St. Johns River at Racy Point near Hastings, Florida.

Figure 17. Boxplot showing an increase in mean salinity at Racy Point near Hastings
                        from 2018 to 2020.
Figure 17.

Salinity data for St. Johns River at Racy Point near Hastings, Florida.

St. Johns River Shands Bridge near Green Cove Springs, Florida—Salinity on the St. Johns River Shands Bridge ranged from 0.3 to 2.8 ppt during the 2020 water year, with a median and mean of 0.5 ppt (fig. 18). There were 44 days of missing salinity data from May to June and 3 days of missing salinity data in September, all caused by equipment malfunction. Salinity peaked in early April after below-average rainfall occurred in March in St. Johns County (fig. 5). A boxplot of salinity data shows a higher median, mean, and maximum for 2020 compared to 2018 and 2019 (fig. 19).

Figure 18. Graph showing salinity at Shands Bridge near Green Cove Springs, showing
                        fairly consistent levels, with the highest in April.
Figure 18.

Daily maximum, minimum, and mean salinity for St. Johns River Shands Bridge near Green Cove Springs, Florida.

Figure 19. Boxplot showing moderate increase in salinity at Shands Bridge near Green
                        Cove Springs from 2018 to 2020.
Figure 19.

Salinity data for St. Johns River Shands Bridge near Green Cove Springs, Florida.

St. Johns River below Shands Bridge near Green Cove Springs, Florida—Salinity on the St. Johns River below Shands Bridge ranged from 0.3 to 4.5 ppt during the 2020 water year, with a median of 0.5 ppt and mean of 0.8 ppt (fig. 20). Daily salinity data were not computed for many days from October to January and for 10 days from June to July because of equipment malfunction. The maximum salinity of 4.5 ppt is higher than the maximum of 2.8 ppt at the nearby station at Shands Bridge, most likely because the monitoring equipment is located near the right bank instead of near the center of the river channel. In addition, salinity was not computed at the Shands Bridge site on the day the peak occurred below Shands Bridge. The 2020 median salinity is the highest among those computed for the 4 years of the study, and the 2020 mean salinity ranked second (fig. 21).

Figure 20. Graph showing highest salinity for St. Johns River below Shands Bridge
                        occurred in June.
Figure 20.

Daily maximum, minimum, and mean salinity for St. Johns River below Shands Bridge near Green Cove Springs, Florida.

Figure 21. Boxplot showing fairly consistent salinity data for St. Johns River below
                        Shands Bridge from 2017 to 2020.
Figure 21.

Salinity data for St. Johns River below Shands Bridge near Green Cove Springs, Florida.

St. Johns River above Buckman Bridge at Jacksonville, Florida—Salinity on the St. Johns River above Buckman Bridge ranged from 0.4 to 12 ppt during the 2020 water year, with a median of 1.5 ppt and mean of 2.6 ppt (fig. 22). Daily maximum salinity peaked above 10 ppt in February, April, and May before above-average rainfall in Clay County in June lowered the salinity (fig. 4). The median and mean salinity for 2020 were both the highest among those computed for the 3 years of the study, although 2018 has incomplete record because the monitoring station was installed that year (fig. 23).

Figure 22. Graph showing higher salinity levels for St. Johns River above Buckman
                        Bridge from February to May.
Figure 22.

Daily maximum, minimum, and mean salinity for St. Johns River above Buckman Bridge at Jacksonville, Florida.

Figure 23. Boxplot showing marked increase in salinity for St. Johns River above Buckman
                        Bridge from 2018 to 2020.
Figure 23.

Salinity data for St. Johns River above Buckman Bridge at Jacksonville, Florida.

St. Johns River Buckman Bridge at Jacksonville, Florida—Salinity on the St. Johns River at Buckman Bridge ranged from 0.3 to 16 ppt for the top location during the 2020 water year, with a median of 1.6 ppt and mean of 2.9 ppt, and from 0.3 to 18 ppt for the bottom location, with a median of 1.8 ppt and mean of 3.2 ppt (figs. 24 and 25). The monitoring station did not record water-quality data at either location for 28 days from February to March and 6 days in May because of equipment malfunction. Salinity during the year was generally lower at the top location relative to the bottom. Salinity at both locations increased gradually from March through May before higher rainfall in June in Duval and Clay Counties lowered the salinity (figs. 3 and 4). The 2020 median and mean salinity at both the top and bottom locations ranked second among those computed for the 4 years of the study (figs. 26 and 27).

Figure 24. Graph showing salinity for Buckman Bridge top location showing increased
                        levels in January and May.
Figure 24.

Daily maximum, minimum, and mean salinity for top location of St. Johns River Buckman Bridge at Jacksonville, Florida.

Figure 25. Graph showing salinity at Buckman Bridge bottom location showing increased
                        levels in January and May.
Figure 25.

Daily maximum, minimum, and mean salinity for bottom location of St. Johns River Buckman Bridge at Jacksonville, Florida.

Figure 26. Boxplot of fluctuating salinity for St. Johns River Buckman Bridge top
                        location from 2017 to 2020, with low levels in 2018.
Figure 26.

Salinity data for top location of St. Johns River Buckman Bridge at Jacksonville, Florida.

Figure 27. Boxplot of fluctuating salinity for St. Johns River Buckman Bridge bottom
                        location 2017 to 2020, with low levels in 2018.
Figure 27.

Salinity data for bottom location of St. Johns River Buckman Bridge at Jacksonville, Florida.

St. Johns River at Christopher Point near Jacksonville, Florida—Salinity at Christopher Point ranged from 0.4 to 24 ppt during the 2020 water year, with a median of 2.9 ppt and mean of 4.2 ppt (fig. 28). The annual maximum salinity occurred in February after very low rainfall in Duval County in January (fig. 3). The 2020 maximum salinity ranked second among those computed for the 5 years of the study, and the median and mean salinity both ranked third (fig. 29).

Figure 28. Graph showing salinity for St. Johns River at Christopher Point showing
                        the highest salinity in February.
Figure 28.

Daily maximum, minimum, and mean salinity for St. Johns River at Christopher Point near Jacksonville, Florida.

Figure 29. Boxplot showing salinity from 2016 to 2020 for St. Johns River at Christopher
                        Point with marked increase in 2017.
Figure 29.

Salinity data for St. Johns River at Christopher Point near Jacksonville, Florida.

St. Johns River below Marco Lake at Jacksonville, Florida—Salinity at Marco Lake ranged from 0.4 to 28 ppt during the 2020 water year, with a median of 6.2 ppt and mean of 7.0 ppt (fig. 30). Salinity was not computed for 6 days in July because of equipment malfunction. As at the Christopher Point site, the annual maximum salinity at this site occurred in February after very low rainfall in Duval County in January (fig. 3). The 2020 median salinity ranked third among those computed for the 5 years of the study, and the mean and maximum salinity ranked second (fig. 31).

Figure 30. Graph showing salinity for St. Johns River below Marco Lake with highest
                        salinity in February.
Figure 30.

Daily maximum, minimum, and mean salinity for St. Johns River below Marco Lake at Jacksonville, Florida.

Figure 31. Boxplot showing salinity for St. Johns River below Marco Lake from 2016
                        to 2020 with very low levels in 2018.
Figure 31.

Salinity data for St. Johns River below Marco Lake at Jacksonville, Florida.

St. Johns River at Jacksonville, Florida—Daily tidally filtered discharge at the St. Johns River at Jacksonville site ranged from −39,900 to 38,300 ft3/s during the 2020 water year, with an annual mean of 5,830 ft3/s (fig. 32). Salinity ranged from 0.4 to 28 ppt over this same period, with a median of 7.6 ppt and mean of 8.4 ppt (fig. 33). Salinity exceeded 25 ppt three times during the water year in January, February, and May. Salinity was not computed for 3 days in February because of equipment malfunction. A comparison of historical annual mean tidally filtered flows indicated that the 2020 streamflow was at the 52d percentile of the 24 years of record; the median tidally filtered flow for the period of record is 5,660 ft3/s (fig. 34). Annual mean tidally filtered streamflow record was used from 1997 onward because of data collection gaps in the historical data prior to 1997. The 2020 mean and median salinity ranked the highest among those computed for the 5 years of the study, but the maximum salinity ranked fourth (fig. 35).

Figure 32. Hydrograph showing fairly consistent daily mean tidally filtered discharge
                        at Jacksonville with the highest values in September.
Figure 32.

Daily mean tidally filtered discharge for St. Johns River at Jacksonville, Florida.

Figure 33. Graph showing salinity for St. Johns River at Jacksonville with highest
                        levels in February.
Figure 33.

Daily maximum, minimum, and mean salinity for St. Johns River at Jacksonville, Florida.

Figure 34. Quantile plot showing nearly average annual mean tidally filtered streamflow
                        data for St. Johns River/Jacksonville in 2020.
Figure 34.

Annual mean tidally filtered streamflow data for St. Johns River at Jacksonville, Florida.

Figure 35. Boxplot showing fairly consistent salinity levels at Jacksonville from
                        2016 to 2020, with marked drop in 2018.
Figure 35.

Salinity data for St. Johns River at Jacksonville, Florida.

St. Johns River Dames Point Bridge at Jacksonville, Florida—Salinity on the St. Johns River at Dames Point Bridge ranged from 3.7 to 34 ppt for the top location during the 2020 water year, with a median of 23 ppt and mean of 22 ppt, and from 4.4 to 34 ppt for the bottom location, with a median of 24 ppt and mean of 23 ppt (figs. 36 and 37). Salinity was not calculated for 28 days in February and March at both locations and for 6 days at the top location in September because of equipment malfunction. Salinity during the year was generally lower at the top location relative to the bottom and fluctuated weekly at both locations because of upstream conditions. The 2020 mean and median salinity at the top location ranked the highest among those calculated for the 4 years of the study, but the mean tied that of 2017 (fig. 38). For the bottom location, the 2020 median salinity ranked the highest among those calculated for the 4 years of the study, and the mean ranked second (fig. 39).

Figure 36. Graph showing salinity at Dames Point Bridge top location at Jacksonville
                        with fairly consistent monthly levels.
Figure 36.

Daily maximum, minimum, and mean salinity for top location of St. Johns River Dames Point Bridge at Jacksonville, Florida.

Figure 37. Graph showing salinity at Dames Point Bridge bottom location at Jacksonville
                        with fairly consistent monthly levels.
Figure 37.

Daily maximum, minimum, and mean salinity for bottom location of St. Johns River at Dames Point Bridge at Jacksonville, Florida.

Figure 38. Boxplot showing salinity at Dames Point Bridge top location with fairly
                        consistent levels from 2017 to 2020.
Figure 38.

Salinity data for top location of St. Johns River at Dames Point Bridge at Jacksonville, Florida.

Figure 39. Boxplot showing salinity data at Dames Point Bridge bottom location with
                        fairly consistent levels from 2017 to 2020.
Figure 39.

Salinity data for bottom location of St. Johns River at Dames Point Bridge at Jacksonville, Florida.

Tributary Sites

The parameters collected on the tributaries of the St. Johns River are mainly affected by rainfall and, at most sites, by tidal fluctuations. Heavy rainfall typically increases discharge and decreases salinity, and the tidal influence introduces more daily fluctuation at tidal sites than at nontidal sites. Like the main stem, tributaries of the St. Johns River are also affected by strong easterly winds. Because of their distance from the ocean, tributary sites and main-stem sites farther upstream require prolonged or extremely strong winds, such as those from a hurricane, to experience increased salinity.

Julington Creek at Old St. Augustine Road near Bayard, Florida—Daily tidally filtered discharge at Julington Creek ranged from −30.7 to 368 ft3/s during the 2020 water year, with an annual mean flow of 28.7 ft3/s (fig. 40). The highest discharge peak in 2020 occurred in June as a result of above-average rainfall in Duval County (fig. 3). Discharge was not calculated for 5 days in July because of equipment malfunction.

Figure 40. Hydrograph daily mean tidally filtered discharge at Julington Creek with
                        the highest level in June.
Figure 40.

Daily mean tidally filtered discharge for Julington Creek at Old St. Augustine Road near Bayard, Florida.

Julington Creek at Hood Landing near Bayard, Florida—Salinity at Julington Creek at Hood Landing ranged from 0.1 to 3.5 ppt during the 2020 water year, with a median of 0.3 ppt and mean of 0.6 ppt (fig. 41). The daily maximum salinity exceeded 1.0 ppt during low flows from March to June and decreased after the discharge peak in June (fig. 40). The 2020 median salinity ranked the highest among those computed for the 5 years of the study, and the mean salinity ranked second (fig. 42).

Figure 41. Graph showing salinity for Julington Creek at Hood Landing near Bayard
                        with higher levels in spring and summer.
Figure 41.

Daily maximum, minimum, and mean salinity for Julington Creek at Hood Landing near Bayard, Florida.

Figure 42. Boxplot showing salinity data for 2016 to 2020 at Julington Creek at Hood
                        Landing near Bayard with peak in 2017.
Figure 42.

Salinity data for Julington Creek at Hood Landing near Bayard, Florida.

Durbin Creek near Fruit Cove, Florida—Daily tidally filtered discharge at Durbin Creek ranged from −39.5 to 270 ft3/s during the 2020 water year, with an annual mean of 50.8 ft3/s (fig. 43). The highest discharge peak in 2020 occurred in September as a result of above-average rainfall in St. Johns County (fig. 5). Salinity ranged from 0.1 to 1.5 ppt, with a median and mean of 0.1 ppt (fig. 44). The boxplot for Durbin Creek salinity data in 2020 shows the same mean and median for all 5 years of the study; the maximum salinity ranked second among those computed for the 5 years of the study (fig. 45). The boxplot includes no whiskers because of the low and steady salinities of freshwater flows through the creek.

Figure 43. Hydrograph daily mean tidally filtered discharge at Durbin Creek peaking
                        in September.
Figure 43.

Daily mean tidally filtered discharge for Durbin Creek near Fruit Cove, Florida.

Figure 44. Graph showing salinity for Durbin Creek near Fruit Cove with consistently
                        low levels.
Figure 44.

Daily maximum, minimum, and mean salinity for Durbin Creek near Fruit Cove, Florida.

Figure 45. Boxplot showing consistent levels in salinity data for Durbin Creek/Fruit
                        Cove from 2016 to 2020.
Figure 45.

Salinity data for Durbin Creek near Fruit Cove, Florida.

Ortega River at Kirwin Road near Jacksonville, Florida—Daily discharge for Ortega River ranged from 3.53 to 1,180 ft3/s during the 2020 water year, with an annual mean of 58.1 ft3/s (fig. 46). Like Julington Creek, Ortega River had the largest discharge peak in June. The peak streamflow for the period of record ranked in the 73d percentile of the 13 years of record (fig. 47). The peak streamflow record does not include 2016, which has incomplete record because the monitoring station was installed that year.

Figure 46. Hydrograph daily mean discharge for Ortega River/Kirwin Road near Jacksonville
                        with highest levels in June.
Figure 46.

Daily mean discharge for Ortega River at Kirwin Road near Jacksonville, Florida.

Figure 47. Quantile plot showing relatively high annual peak streamflow at Ortega
                        River at Kirwin Road near Jacksonville in 2020.
Figure 47.

Peak streamflow at Ortega River at Kirwin Road near Jacksonville, Florida.

Ortega River salinity at Jacksonville, Florida—Salinity at Ortega River ranged from 0.0 to 13 ppt during the 2020 water year, with a median of 0.1 ppt and mean of 0.6 ppt (fig. 48). Peak maximum daily salinity values were calculated for January to May during periods of discharge below 100 ft3/s in Ortega River (fig. 46). The 2020 maximum and median salinity ranked the highest among those calculated for the 5 years of the study, and the mean salinity tied with 2019 for second (fig. 49).

Figure 48. Graph showing salinity at Ortega River with highest levels from January
                        to May.
Figure 48.

Daily maximum, minimum, and mean salinity for Ortega River salinity at Jacksonville, Florida.

Figure 49. Boxplot of fairly consistent salinity for Ortega River at Jacksonville
                        2016 to 2020 with highest level in 2020.
Figure 49.

Data for Ortega River salinity at Jacksonville, Florida.

Cedar River at San Juan Avenue at Jacksonville, Florida—Daily tidally filtered discharge at Cedar River ranged from −52.9 to 1,020 ft3/s during the 2020 water year, with an annual mean of 44.2 ft3/s (fig. 50). Salinity ranged from 0.0 to 15 ppt, with a median of 1.0 ppt and mean of 2.7 ppt (fig. 51). Daily tidally filtered discharge was not calculated for 7 days in December, 3 days in January, 4 days in March, 1 day in May, 4 days in June, 3 days in August, and was estimated for 4 days in June because of equipment malfunction. As at other tributary sites, the peak discharge at Cedar River occurred during a sharp rise in June. The 2020 mean salinity ranked second among those computed for the 5 years of the study, and the median salinity ranked third (fig. 52).

Figure 50. Hydrograph daily mean tidally filtered discharge for Cedar River at San
                        Juan Avenue with June and August spikes.
Figure 50.

Daily mean tidally filtered discharge for Cedar River at San Juan Avenue at Jacksonville, Florida.

Figure 51. Graph showing salinity for Cedar River at San Juan Avenue with very low
                        levels June to September and peak in February.
Figure 51.

Daily maximum, minimum, and mean salinity for Cedar River at San Juan Avenue at Jacksonville, Florida.

Figure 52. Boxplot of salinity data for Cedar River at San Juan Avenue from 2016 to
                        2020 with marked decrease in 2018.
Figure 52.

Salinity data for Cedar River at San Juan Avenue at Jacksonville, Florida.

Pottsburg Creek near South Jacksonville, Florida—Daily discharge for Pottsburg Creek at Bowden Road ranged from 1.94 to 437 ft3/s during the 2020 water year, with an annual mean flow of 26.0 ft3/s (fig. 53). Daily mean discharge peaked above 200 ft3/s in October, June, and August, all of which had above-average rainfall in Duval County (fig. 3). The peak streamflow for the period of record ranked in the 45th percentile of the 10 years of record (fig. 54).

Figure 53. Hydrograph showing daily mean discharge for Pottsburg Creek/South Jacksonville
                        with highest levels in June.
Figure 53.

Daily mean discharge for Pottsburg Creek near South Jacksonville, Florida.

Figure 54.

Peak streamflow at Pottsburg Creek near South Jacksonville, Florida.

Pottsburg Creek at U.S. 90 near South Jacksonville, Florida—Daily tidally filtered discharge at Pottsburg Creek at U.S. 90 ranged from −11.4 to 488 ft3/s during the 2020 water year, with an annual mean flow of 46.0 ft3/s (fig. 55). Daily tidally filtered discharge was not calculated for 3 days in October, 10 days in November, 7 days in December, and 9 days in June because of equipment malfunction. The daily discharge peaked two times over 300 ft3/s, and the peak that occurred in June was the highest since September 2017. Salinity ranged from 0.0 to 12.0 ppt, with a median of 0.4 ppt and mean of 1.1 ppt (fig. 56). Peak salinity exceeded 10 ppt for 9 consecutive days in May during periods of below-average rainfall in Duval County (fig. 3). The maximum salinity tied 2016 and 2017 for highest among those computed for the 5 years of the study, and the 2020 mean salinity tied with 2016 for second (fig. 57).

Figure 55. Hydrograph daily mean tidally filtered discharge for Pottsburg Creek at
                        U.S. 90 with highest peaks June and August.
Figure 55.

Daily mean tidally filtered discharge for Pottsburg Creek at U.S. 90 near South Jacksonville, Florida.

Figure 56. Graph showing salinity for Pottsburg Creek at U.S. 90 with highest levels
                        in May.
Figure 56.

Daily maximum, minimum, and mean salinity for Pottsburg Creek at U.S. 90 near South Jacksonville, Florida.

Figure 57. Boxplot showing salinity data for Pottsburg Creek at U.S. 90 for 2016 to
                        2020 with marked decrease in 2018.
Figure 57.

Salinity data for Pottsburg Creek at U.S. 90 near South Jacksonville, Florida.

Trout River near Jacksonville, Florida—Daily tidally filtered discharge at Trout River ranged from −320 to 1,190 ft3/s during the 2020 water year, with an annual mean flow of 35.5 ft3/s (fig. 58). Daily tidally filtered discharge was not calculated for 5 days in October and 9 days in June because of equipment malfunction. The daily discharge exceeded 600 ft3/s two times during the period, and the peak that occurred in August was the highest since September 2017.

Figure 58. Hydrograph showing daily mean tidally filtered discharge for Trout River
                        showing spikes November and August.
Figure 58.

Daily mean tidally filtered discharge for Trout River near Jacksonville, Florida.

Trout River below U.S. 1 at Dinsmore, Florida—Salinity at Trout River below U.S. 1 ranged from 0.0 to 14 ppt during the 2020 water year, with a median of 0.5 ppt and mean of 2.3 ppt (fig. 59). Daily maximum salinity values peaked above 10 ppt during portions of April through June. The second-highest maximum yearly salinity of the 5-year period of record (14 ppt) occurred on multiple days in late May and early June and ended when flow increased in Trout River (fig. 58). The 2020 mean and median salinity ranked fourth among those calculated for the 5 years of the study (fig. 60).

Figure 59. Graph showing salinity for Trout River below U.S. 1 at Dinsmore with peaks
                        April to June.
Figure 59.

Daily maximum, minimum, and mean salinity for Trout River below U.S. 1 at Dinsmore, Florida.

Figure 60. Boxplot showing salinity data for Trout River below U.S. 1 at Dinsmore
                        for 2016 to 2020 with marked decrease in 2018.
Figure 60.

Salinity data for Trout River below U.S. 1 at Dinsmore, Florida.

Broward River below Biscayne Blvd. near Jacksonville, Florida—Daily tidally filtered discharge at Broward River ranged from −46.5 to 398 ft3/s during the 2020 water year, with an annual mean flow of 25.6 ft3/s (fig. 61). Discharge was relatively consistent during the period, with 7 peaks of daily tidally filtered discharge exceeding 100 ft3/s. Salinity ranged from 0.0 to 14 ppt, with a median of 0.6 ppt and mean of 1.7 ppt (fig. 62). Salinity remained below 6 ppt most of the year but exceeded 10 ppt in October, November, and April (fig. 62). The 2020 median, mean, and maximum salinity ranked third among those calculated for the 5 years of the study (fig. 63).

Figure 61. Hydrograph daily mean tidally filtered discharge for Broward River below
                        Biscayne Boulevard/Jacksonville peaking in August.
Figure 61.

Daily mean tidally filtered discharge for Broward River below Biscayne Boulevard near Jacksonville, Florida.

Figure 62. Graph showing salinity for Broward River below Biscayne Boulevard with
                        highest level in April.
Figure 62.

Daily maximum, minimum, and mean salinity for Broward River below Biscayne Boulevard near Jacksonville, Florida.

Figure 63. Boxplot of salinity data for Broward River below Biscayne Boulevard/Jacksonville
                        for 2016 to 2020 with marked 2018 decrease.
Figure 63.

Salinity data for Broward River below Biscayne Boulevard near Jacksonville, Florida.

Dunn Creek at Dunn Creek Road near Eastport, Florida—Daily tidally filtered discharge at Dunn Creek ranged from −5.62 to 172 ft3/s during the 2020 water year, with an annual mean flow of 25.8 ft3/s (fig. 64). Daily tidally filtered discharge was estimated for 5 days in December because of equipment malfunction. The cumulative 4-month rainfall in Duval County was 3.62 in. above the long-term average from June to September, and the daily tidally filtered discharge peaked over 100 ft3/s five times in that period (fig. 3). Salinity during the 2020 water year ranged from 0.0 to 17 ppt, with a median of 1.9 ppt and mean of 3.1 ppt (fig. 65). Daily maximum salinity exceeded 15 ppt for 8 days from April to May and remained below 7 ppt from mid-June to mid-September. The 2020 maximum and mean salinity tied with 2016 for second among those calculated for the 5 years of the study, and the median salinity ranked third (fig. 66). Salinity was not calculated for 2 days in April because of equipment malfunction.

Figure 64. Hydrograph showing daily mean tidally filtered discharge for Dunn Creek/Dunn
                        Creek Road/Eastport with spike in August.
Figure 64.

Daily mean tidally filtered discharge for Dunn Creek at Dunn Creek Road near Eastport, Florida.

Figure 65. Graph showing salinity for Dunn Creek/Dunn Creek Road/Eastport with highest
                        levels April to June.
Figure 65.

Daily maximum, minimum, and mean salinity for Dunn Creek at Dunn Creek Road near Eastport, Florida.

Figure 66. Boxplot showing salinity data for Dunn Creek/Dunn Creek Road/Eastport for
                        2016 to 2020 with marked decrease in 2018.
Figure 66.

Salinity data for Dunn Creek at Dunn Creek Road near Eastport, Florida.

Clapboard Creek near Jacksonville, Florida—Daily tidally filtered discharge at Clapboard Creek ranged from −74.1 to 278 ft3/s during the 2020 water year, with an annual mean flow of 61.3 ft3/s (fig. 67). Tidally filtered discharge remained below 200 ft3/s for the entire period except during two peaks in October and two in September. The highest peak flow in September ranked second, and the annual mean flow ranked first for the 5-year period of record considered for this study.

Figure 67. Hydrograph showing daily mean tidally filtered discharge for Clapboard
                        Creek/Jacksonville with low levels January to July.
Figure 67.

Daily mean tidally filtered discharge for Clapboard Creek near Jacksonville, Florida.

Clapboard Creek above Buckhorn Bluff near Jacksonville, Florida—Salinity at Clapboard Creek ranged from 1.0 to 32 ppt during the 2020 water year, with a median of 21 ppt and mean of 20 ppt (fig. 68). The lowest salinity occurred in September when discharge increased through Clapboard Creek (fig. 67). The 2020 mean salinity ranked fourth among those calculated for the 5 years of the study, and the median salinity tied with 2017 and 2019 for second (fig. 69).

Figure 68. Graph showing reduced salinity levels for Clapboard Creek above Buckhorn
                        Bluff/Jacksonville from June to September.
Figure 68.

Daily maximum, minimum, and mean salinity for Clapboard Creek above Buckhorn Bluff near Jacksonville, Florida.

Figure 69. Boxplot of salinity data for Clapboard Creek above Buckhorn Bluff/Jacksonville
                        for 2016 to 2020 with marked decrease in 2018.
Figure 69.

Salinity data for Clapboard Creek above Buckhorn Bluff near Jacksonville, Florida.

Discharge and Salinity Site Comparison

Analysis of the annual mean tidally filtered discharge for the 2020 water year along the main stem of the St. Johns River indicates that streamflow increased with distance downstream, as expected (fig. 70). Relative to the 2019 water year, annual mean discharge for the 2020 water year was higher for two of the main-stem sites and identical for the other site. Over the 5 years considered for this study, the second-highest annual mean discharge was computed at the St. Johns River at Astor site , the Buffalo Bluff site tied for second, and the Jacksonville site ranked third. Of the tributaries, annual mean discharge was highest at Clapboard Creek, followed by Ortega River, Durbin Creek, Pottsburg Creek at U.S. 90, Cedar River, Trout River, Julington Creek, Pottsburg Creek near South Jacksonville, Dunn Creek, and Broward River, whose annual mean was lowest (fig. 71). Annual mean discharge at 8 of the 10 tributary monitoring sites was higher for the 2020 water year than for the 2019 water year, and the computed annual mean flow at Clapboard Creek was the highest over the 5 years considered for this study (fig. 71). The countywide annual rainfall for the 2020 water year was above the average in three of the five counties, higher in three of the five counties for the 2020 water year relative to the 2019 water year, and ranked third among the annual rainfall totals for the past 5 years (fig. 72).

Figure 70. Graph showing annual mean discharge at St. Johns River main-stem monitoring
                        sites 2016 to 2020 with highest levels in 2018.
Figure 70.

Annual mean tidally filtered discharge at St. Johns River main-stem monitoring sites.

Figure 71. Graph showing annual mean discharge at St. Johns River tributary sites
                        2016 to 2020 with highest levels primarily in 2017.
Figure 71.

Annual mean discharge at St. Johns River tributary monitoring sites.

Figure 72. Graph showing annual rainfall for Duval, Clay, St. Johns, Putnam, and Volusia
                        Counties 2016 to 2020 with most rainfall in 2017.
Figure 72.

Annual rainfall for Duval, Clay, St. Johns, Putnam, and Volusia Counties.

Annual mean salinity for the main-stem sites generally decreased with distance upstream, which was expected (fig. 73). Of all sites in 2020, Dames Point had the highest annual mean salinities, which were 22 ppt near the surface and 23 ppt near the bottom of the water column. The 2020 annual mean salinity was higher than that of 2019 at all main-stem sites (fig. 73). The 2020 salinity at the main-stem sites, when compared to all 5 years of the study, ranked first at Dancy Point, Racy Point, Shands Bridge, below Shands Bridge, above Buckman Bridge, and at Jacksonville (Acosta Bridge), tied for first at Buffalo Bluff, second at Buckman Bridge (top and bottom) and Dames Point (top and bottom), and third at Christopher Point and Marco Lake.

Clapboard Creek had the highest annual mean salinity (20 ppt) of all tributaries in 2020 because of its proximity to the Atlantic Ocean. Durbin Creek salinity (0.1 ppt) was the lowest of all monitoring locations and was slightly lower than those of Julington Creek and Ortega River (both 0.6 ppt) (fig. 74). A simple comparison of annual mean salinity of tributary sites between the 2019 and 2020 water years indicates salinity was higher in 2020 at all locations except Trout River, Dunn Creek, and Clapboard Creek, which were lower, and Durbin Creek, which remained the same (fig. 74). The 2020 salinity at the tributary sites, when compared to the preceding 4 years of the study, ranked second at Ortega River and Julington Creek, tied for second at Dunn Creek, ranked third at Cedar River, Pottsburg Creek, and Broward River, and ranked fourth at Trout River and Clapboard Creek. Durbin Creek salinity remained the same at 0.1 ppt for all 5 years. The annual rainfall total for Duval County ranked second among those computed for the 5 years considered for this study (fig. 72).

Figure 73. Graph showing annual mean salinity St. Johns River monitoring sites 2016
                        to 2020 with the highest levels at Dames Point.
Figure 73.

Annual mean salinity at St. Johns River main-stem monitoring sites.

Figure 74. Graph showing annual mean salinity St. Johns River tributary monitoring
                        sites 2016 to 2020 with highest levels at Clapboard Creek.
Figure 74.

Annual mean salinity at St. Johns River tributary monitoring sites.

Summary

The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, collected data during the 2020 water year, from October 2019 to September 2020, at 26 sites on the St. Johns River and its tributaries. This period of data collection was concurrent with river dredging, which was initiated in February 2018 by the U.S. Army Corps of Engineers as part of its project to deepen the first 13 river miles of Jacksonville Harbor. Data collection began in the 2016 water year, and this is the fifth annual report of the study. Stage was measured at 17 sites, discharge was calculated at 13 sites, and water temperature and specific conductance data were collected at 20 sites; all parameters were measured at some sites. Salinity was calculated for each site where water temperature and specific conductance data were collected. Data were collected over a range of hydrologic conditions, including a period of above-average annual rainfall in Duval, Clay, and Volusia Counties. Many factors—such as wind, rainfall, and hurricanes—can influence flow and salinity within the study area.

The annual mean tidally filtered discharge for the 2020 water year increased with distance downstream, as expected, along the main stem of the St. Johns River. The second-highest annual mean discharge was computed at the St. Johns River at Astor site over the 5 years considered for this study, while the Buffalo Bluff site tied for second, and the Jacksonville site ranked third. The 2020 annual mean salinity was higher than that of 2019 at all main-stem sites. The 2020 salinity at the main-stem sites, when compared to all 5 years of the study, ranked first at Dancy Point, Racy Point, Shands Bridge, below Shands Bridge, above Buckman Bridge, and at Jacksonville (Acosta Bridge), tied for first at Buffalo Bluff, ranked second at Buckman Bridge (top and bottom) and Dames Point (top and bottom), and ranked third at Christopher Point and Marco Lake.

Of the tributaries, annual mean discharge was highest at Clapboard Creek, followed by Ortega River, Durbin Creek, Pottsburg Creek at U.S. 90, Cedar River, Trout River, Julington Creek, Pottsburg Creek near South Jacksonville, Dunn Creek, and Broward River, whose annual mean was lowest. Annual mean discharge at 8 of the 10 tributary monitoring sites was higher for the 2020 water year than for the 2019 water year, and the highest annual mean flow was computed at Clapboard Creek over the 5 years considered for this study. Annual mean salinity at all tributary sites in the 2020 water year was higher than that of the 2019 water year except for Trout River, Dunn Creek, and Clapboard Creek, which were lower, and Durbin Creek, which remained the same. The 2020 salinity at the tributary sites, when compared to all 5 years of the study, ranked second at Ortega River and Julington Creek, tied for second at Dunn Creek, ranked third at Cedar River, Pottsburg Creek, and Broward River, and ranked fourth at Trout River and Clapboard Creek. Durbin Creek salinity remained the same at 0.1 ppt for all 5 years. The annual rainfall total for Duval County ranked second among those computed for the 5 years considered for this study.

References Cited

Florida Department of Environmental Protection, 2016, Jacksonville Harbor Federal Channel Expansion Permit No. 0129277–017–BI, p. 22–23.

Godin, G., 1972, The analysis of tides: Toronto, University of Toronto Press, 264 p.

Jacksonville Port Authority [JAXPORT], 2018, Jacksonville harbor deepening fact sheet: 1 p., accessed March 21, 2019, at https://www.jaxport.com/sites/default/files/images/HarborDeepeningInfo_1.pdf.

Levesque, V.A., and Oberg, K.A., 2012, Computing discharge using the index velocity method: U.S. Geological Survey Techniques and Methods, book 3, chap. A23, 148 p. [Also available at https://pubs.usgs.gov/tm/3a23/.]

Rantz, S.E., and others, 1982, Measurement and computation of streamflow, v. 1 and 2: U.S. Geological Survey Water-Supply Paper 2175, 631 p.

Ryan, P.J., 2018, Continuous stream discharge, salinity, and associated data collected in the lower St. Johns River and its tributaries, Florida, 2016: U.S. Geological Survey Open-File Report 2018–1108, 28 p., accessed March 20, 2020, at https://doi.org/10.3133/ofr20181108.

Ryan, P.J., 2019, Continuous stream discharge, salinity, and associated data collected in the lower St. Johns River and its tributaries, Florida, 2017: U.S. Geological Survey Open-File Report 2019–1078, 35 p., accessed March 20, 2020, at https://doi.org/10.3133/ofr20191078.

Ryan, P.J., 2020a, Continuous stream discharge, salinity, and associated data collected in the lower St. Johns River and its tributaries, Florida, 2018: U.S. Geological Survey Open-File Report 2020–1061, 34 p., accessed July 9, 2020, at https://doi.org/10.3133/ofr20201061.

Ryan, P.J., 2020b, Continuous stream discharge, salinity, and associated data collected in the lower St. Johns River and its tributaries, Florida, 2019: U.S. Geological Survey Open-File Report 2020–1140, 48 p., accessed May 26, 2021, at https://doi.org/10.3133/ofr20201140.

Sauer, V.B., and Turnipseed, D.P., 2010a, Stage measurement at gaging stations: U.S. Geological Survey Techniques and Methods, book 3, chap. A7, 45 p. [Also available at https://doi.org/10.3133/tm3A7.]

Sauer, V.B., and Turnipseed, D.P., 2010b, Discharge measurements at gaging stations: U.S. Geological Survey Techniques and Methods, book 3, chap. A8, 87 p. [Also available at https://doi.org/10.3133/tm3A8.]

St. Johns River Water Management District [SJRWMD], 2021, Rainfall summary—Hydrologic conditions report: St. Johns River Water Management District report, 1 p., accessed May 26, 2021, at http://webapub.sjrwmd.com/agws10/hydroreport/.

U.S. Army Corps of Engineers, [USACE], 2014, Jacksonville Harbor navigation study, Duval County, Florida: U.S. Army Corps of Engineers, Jacksonville District, Final integrated general reevaluation report II and supplemental environmental impact statement, 289 p. [Also available at https://usace.contentdm.oclc.org/digital/collection/p16021coll7/id/2118.]

U.S. Geological Survey, [USGS], 2021, USGS water data for the Nation: U.S. Geological Survey National Water Information System database, accessed May 2021 at https://doi.org/10.5066/F7P55KJN.

Wagner, R.J., Boulger, R.W., Jr., Oblinger, C.J., and Smith, B.A., 2006, Guidelines and standard procedures for continuous water-quality monitors—Station operation, record computation, and data reporting: U.S. Geological Survey Techniques and Methods, book 1, chap. D3, 51 p. [Also available at https://pubs.usgs.gov/tm/2006/tm1D3/pdf/TM1D3.pdf.]

Conversion Factors

U.S. customary units to International System of Units

Multiply By To obtain
Length
inch (in.) 2.54 centimeter (cm)
foot (ft) 0.3048 meter (m)
mile (mi) 1.609 kilometer (km)
Flow rate
cubic foot per second (ft3/s) 0.02832 cubic meter per second (m3/s)

Temperature in degrees Celsius (°C) may be converted to degrees Fahrenheit (°F) as:

°F = (1.8 × °C) + 32.

Datum

Vertical coordinate information is referenced to the North American Vertical Datum of 1988 (NAVD 88).

Horizontal coordinate information is referenced to the North American Datum of 1983 (NAD 83).

Altitude, as used in this report, refers to distance above the vertical datum.

Supplemental Information

Specific conductance is given in microsiemens per centimeter at 25 degrees Celsius (µS/cm at 25 °C).

Abbreviations

JAXPORT

Jacksonville Port Authority

NOAA

National Oceanic and Atmospheric Administration

ppt

parts per thousand

SJRWMD

St. Johns River Water Management District

USACE

U.S. Army Corps of Engineers

USGS

U.S. Geological Survey

For more information about this publication, contact

Director, Caribbean-Florida Water Science Center

U.S. Geological Survey

4446 Pet Lane, Suite 108

Lutz, FL 33559

For additional information, visit

https://www.usgs.gov/centers/car-fl-water

Publishing support provided by

Lafayette Publishing Service Center

Suggested Citation

Ryan, P.J., 2022, Continuous stream discharge, salinity, and associated data collected in the lower St. Johns River and its tributaries, Florida, 2020: U.S. Geological Survey Open-File Report 2022–1024, 48 p., https://doi.org/10.3133/ofr20221024.

ISSN: 2331-1258 (online)

Study Area

Publication type Report
Publication Subtype USGS Numbered Series
Title Continuous stream discharge, salinity, and associated data collected in the lower St. Johns River and its tributaries, Florida, 2020
Series title Open-File Report
Series number 2022-1024
DOI 10.3133/ofr20221024
Year Published 2022
Language English
Publisher U.S. Geological Survey
Publisher location Reston, VA
Contributing office(s) Caribbean-Florida Water Science Center
Description Report: ix, 48 p.; Dataset
Country United States
State Florida
Other Geospatial St. Johns River
Online Only (Y/N) Y
Google Analytic Metrics Metrics page
Additional publication details