The eastern oyster (Crassostrea virginica) and the reefs they create provide significant ecosystem services. This study measured their possible role in nutrient mitigation through bioassimilation, burial, and oyster-mediated sediment denitrification in near-shore shallow water (< 1 m water depth) and deep-water (> 1 m water depth) oyster reefs in Louisiana. Nitrogen (N) and carbon (C) in shell and tissue differed by oyster reproductive status, size, and habitat type. Changes in tissue percent N and C post-spawning combined with significant reductions in tissue dry weight from the release of gametes, resulted in 20 and 46% reductions in tissue N and C load (mg), respectively, for a 100-mm oyster. Oyster reefs did not enhance burial rates, with burial range rates estimated at 1.4–2.6 g N m⁻² year⁻¹, and 26.9–43.8 g C m⁻² year⁻¹. Closed-system ex situ incubations indicated net denitrification in all habitat types studied, with the highest rates exceeding 600 µmol N m⁻² h⁻¹ during the summer, but no enhancement attributable to oyster reefs specifically. Within the highly productive, organic-rich wetland complex systems of coastal Louisiana, oyster reefs were not associated with enhanced denitrification, likely due to the organic-rich setting, and redundant supplies of organic nitrogen and carbon from adjacent marshes. Context remains critical in determining ecosystem provision of habitats, and efforts to extrapolate and predict nitrogen removal across locations necessitates consideration of local conditions. Considering the large extent of reefs and oyster production across coastal Louisiana, oyster habitats may still contribute to N and C mitigation, but their unique contribution likely comes from bioassimilation, and removal of the oysters from the system.