Dams can alter the chemical and physical conditions of downstream environments by increasing stream temperatures, altering nutrient limitation, reducing flow variability, and reducing fine sediment deposition. However, little is known about how fundamental stream ecosystem processes like productivity and respiration respond to dams. Nutrient diffusing substrates were installed in three dam streams and three control streams to evaluate the effect of dams on benthic gross primary productivity (GPP), respiration (R), and chlorophyll α production. Dam streams were an average of 5.6 °C warmer than control streams but GPP, R and chlorophyll α were not different between control and dam streams. Phosphorus enrichment increased heterotrophic R relative to controls (~1.8×) but not autotrophic GPP, R or chlorophyll α. Stream nutrient concentrations and nutrient limitation of heterotrophic R were similar in dam and control streams, suggesting that the dams had limited effects on nutrient transport downstream. Autotrophic GPP, R and chlorophyll α were limited by light and varied within and across streams, potentially masking our ability to detect differences caused solely by dams. Dams may alter stream ecosystem function but consideration of other factors associated with and independent of dams is critical for predicting ecosystem responses to dams.