Peatlands in the northern permafrost region store large amounts of organic carbon, most of which is currently stored in frozen peat deposits. Recent warming at high-latitudes has accelerated permafrost thaw in peatlands, which will likely result in the loss of soil organic carbon from previously frozen peat deposits to the atmosphere. Here, we report soil organic carbon inventories, soil physical data, and field descriptions from a collapse-scar bog chronosequence located in a peatland ecosystem at Koyukuk Flats National Wildlife Refuge in Alaska.